OSA-LNCN2987


Function Link


Basic Info

Chr:

Chr2

Start:

16084024

End:

16086076

Strand:

-

Ref_name:

OSA-LNCN2987

Sequence
(OSA-LNCN2987.1):

AUAUAAUAAUAGUAAUACUAGUAGUAGUAUAACAACAGUAGUGUAGUAGUAAUAGUAGUAUAGUAGUACUACUGAUCACGCGUCUGUUGGGGGGGGGGGGGCAGCGCGCACUCCCGGCCCAUACGGCCCACGCAGCGCACGCAUGAUUUUUCCUUCUCUAAUCACCAUUGUUUUCUUUUUUUUUUCUGCUUUUUUUUCUUCCGUGAUUUUUUUUCGCUUUCCAUUUUUUUUUUGCUUUUUUUCCUGAUUACUUUUUAAUCUUCCAGCAGCAAGUGUUUUCAAUUUUUUUUGAAAGUUUUUAAAUUUUGACUUGAAAAUUUUUAAAUCUUAAUUUAAAAAAAUUCAAAUCUCGAGUUGAAAGUUUUUAAAUCCGAGUCGAAAGUUUUCAAAUCCGAGUUGAAAGUUUUCAAAUCUCGAGCUGAAAGUUUUCAAAUCCGAGGUGAAAGUUUUCAAAUCUCGAGCUGAAAGUUUUCAAAUCCGAGUUGAAAGUUUUCAAAUCUCGAACUGAAUGUUUUCAAAUCUCAAGUUGAAAGUUUUCAAAUUUGAGUUGAAAGUUUUCAAAUCUCGAGUUGAAAGUUUUCAAAAAUUUUCUUGCAAAUUGAAAAUUUUCAAAGUUUGAGUUGAAAGUUUUCAAAAUUUGAGUUCAAAAUUUAAAUCUUAAGUCAAAAGUUUUCAAAUGUAACUUCAAUUUUUUUCAAUCUAUCAGUAAAAAAAAUCUCCUAAUAAAAUAAAAAAUCUAUUGUUAAUUUCCGUCAUUAUCCUUAACUACCGUAUUCUUCCGAGAACGUGCGCCGCGUGCACGCUAGUUCUGCUCGCGGCGCGUACGCGCGUACUAGGAAGGCCUGAUGAUCUGACCCUUCCAACAGAUCAGAUAGCUCACAUCCUCCCCGUCCCCGCUUCUUACCGCUGCGUUAAUGGGCCACGCAUCCUUGCCCUUUUGCCACCGCAUUGGGCCGCCUCCGCCGGGCGCAUGCCUUUGGGACACGGAAACUAAGGGCAAUAGCAGUGCAAGCUAUAGGGCCCAUACCCCUAGCCCAAAGUCAUAGUUCAAAGACACUCACCCCAUAGUGGAAGCACCUAUAUAUGUGUAGCUUAAUUAGAUAGAGACGCAGGUGAAGGAAACGAAGCCCACAGUGGGCGAGACUCUAUGCGAGGACACGGGUAGCGCACCCAAAUUUAUUUUCCUCACCUACCCCUCACCCUCAGCGCAUCUCCUCCUUCGCCUCGCCUUCUCUUCCCUCGUCGUGCUCUCCUCCCUCGCGGCGGACGUCGGGGACACCGCCGCUGUGCGCCUCGCCUCGCCGUCGACCGCGCCGCCCGCACCGCUCGCUCCGCCCGCGCCGCCCGCUCCUCCUCCCGCUCGGACUCGGGAGCGGUGGGGGCGGCUGUAGUGGACGGCGCGGCGCCGACGGUGGGAGCGGCGGGAGUGGACGAGACGGCUCCGACGGGCGGCCGGCGGCGGGAGCGGACGGCUUCUACACCUCCGCGGCGCAGGAGGUCGUCGUGGCGGCAGCGGCGGCGGUGGAUCUGUCCGCCGUCCCUCCCCUCUCCCUCCCCCACUCCAUUGCUUCGACCGCUUCUGCCUCCGGCGAAGCGUCGAUCCAUCUAUCUCGCUGCCGCCGCCAUUUUUGUUUCUUGGGAGCUCGCCGGUGACGUGGUAUGUGUGUUGGUGGUGUGUGUUCAGAUUUGUUGAUUUGUGUUCGAUUUUUGUUUACUUGCCCUCGAUUUGUGUUCUUUGAUUUGUUGCAUUGUUCUGAUUUGGUUUUGAUUUUGAUUUGUGUUGAUGCAGCUGGAAGUGUGCUAGGCGCCUCCCAGCUCGUCGGGCACCCCGGUGGCAGCUGCGGCGCCGUCCGACGAGAUGGCGAGGCCGCCCUGGAUUUUGCUGUAGCGGGAGUGGAUUCGGAGGGCGUAUCGGGGAUUUCGCCCUUGGAUUUCACCGCGAGGGCACGUGUGGGCGAAGCCACGACGCCCACAGCAUGCACGCCUCCAGUCUUCUCCUCUGCUCACGGC

Sequence
(OSA-LNCN2987.2):

AUAUAAUAAUAGUAAUACUAGUAGUAGUAUAACAACAGUAGUGUAGUAGUAAUAGUAGUAUAGUAGUACUACUGAUCACGCGUCUGUUGGGGGGGGGGGGGCAGCGCGCACUCCCGGCCCAUACGGCCCACGCAGCGCACGCAUGAUUUUUCCUUCUCUAAUCACCAUUGUUUUCUUUUUUUUUUCUGCUUUUUUUUCUUCCGUGAUUUUUUUUCGCUUUCCAUUUUUUUUUUGCUUUUUUUCCUGAUUACUUUUUAAUCUUCCAGCAGCAAGUGUUUUCAAUUUUUUUUGAAAGUUUUUAAAUUUUGACUUGAAAAUUUUUAAAUCUUAAUUUAAAAAAAUUCAAAUCUCGAGUUGAAAGUUUUUAAAUCCGAGUCGAAAGUUUUCAAAUCCGAGUUGAAAGUUUUCAAAUCUCGAGCUGAAAGUUUUCAAAUCCGAGGUGAAAGUUUUCAAAUCUCGAGCUGAAAGUUUUCAAAUCCGAGUUGAAAGUUUUCAAAUCUCGAGUUGAAAGUUUUCAAAAAUUUUCUUGCAAAUUGAAAAUUUUCAAAGUUUGAGUUGAAAGUUUUCAAAAUUUGAGUUCAAAAUUUAAAUCUUAAGUCAAAAGUUUUCAAAUGUAACUUCAAUUUUUUUCAAUCUAUCAGUAAAAAAAAUCUCCUAAUAAAAUAAAAAAUCUAUUGUUAAUUUCCGUCAUUAUCCUUAACUACCGUAUUCUUCCGAGAACGUGCGCCGCGUGCACGCUAGUUCUGCUCGCGGCGCGUACGCGCGUACUAGGAAGGCCUGAUGAUCUGACCCUUCCAACAGAUCAGAUAGCUCACAUCCUCCCCGUCCCCGCUUCUUACCGCUGCGUUAAUGGGCCACGCAUCCUUGCCCUUUUGCCACCGCAUUGGGCCGCCUCCGCCGGGCGCAUGCCUUUGGGACACGGAAACUAAGGGCAAUAGCAGUGCAAGCUAUAGGGCCCAUACCCCUAGCCCAAAGUCAUAGUUCAAAGACACUCACCCCAUAGUGGAAGCACCUAUAUAUGUGUAGCUUAAUUAGAUAGAGACGCAGGUGAAGGAAACGAAGCCCACAGUGGGCGAGACUCUAUGCGAGGACACGGGUAGCGCACCCAAAUUUAUUUUCCUCACCUACCCCUCACCCUCAGCGCAUCUCCUCCUUCGCCUCGCCUUCUCUUCCCUCGUCGUGCUCUCCUCCCUCGCGGCGGACGUCGGGGACACCGCCGCUGUGCGCCUCGCCUCGCCGUCGACCGCGC

Sequence
(OSA-LNCN2987.3):

AUAUAAUAAUAGUAAUACUAGUAGUAGUAUAACAACAGUAGUGUAGUAGUAAUAGUAGUAUAGUAGUACUACUGAUCACGCGUCUGUUGGGGGGGGGGGGGCAGCGCGCACUCCCGGCCCAUACGGCCCACGCAGCGCACGCAUGAUUUUUCCUUCUCUAAUCACCAUUGUUUUCUUUUUUUUUUCUGCUUUUUUUUCUUCCGUGAUUUUUUUUCGCUUUCCAUUUUUUUUUUGCUUUUUUUCCUGAUUACUUUUUAAUCUUCCAGCAGCAAGUGUUUUCAAUUUUUUUUGAAAGUUUUUAAAUUUUGACUUGAAAAUUUUUAAAUCUUAAUUUAAAAAAAUUCAAAUCUCGAGUUGAAAGUUUUUAAAUCCGAGUCGAAAGUUUUCAAAUCCGAGUUGAAAGUUUUCAAAUCUCGAGCUGAAAGUUUUCAAAUCCGAGGUGAAAGUUUUCAAAUCUCGAGCUGAAAGUUUUCAAAUCCGAGUUGAAAGUUUUCAAAUCUCGAACUGAAUGUUUUCAAAUCUCAAGUUGAAAGUUUUCAAAUUUGAGUUGAAAGUUUUCAAAUCUCGAGUUGAAAGUUUUCAAAAAUUUUCUUGCAAAUUGAAAAUUUUCAAAGUUUGAGUUGAAAGUUUUCAAAAUUUGAGUUCAAAAUUUAAAUCUUAAGUCAAAAGUUUUCAAAUGUAACUUCAAUUUUUUUCAAUCUAUCAGUAAAAAAAAUCUCCUAAUAAAAUAAAAAAUCUAUUGUUAAUUUCCGUCAUUAUCCUUAACUACCGUAUUCUUCCGAGAACGUGCGCCGCGUGCACGCUAGUUCUGCUCGCGGCGCGUACGCGCGUACUAGGAAGGCCUGAUGAUCUGACCCUUCCAACAGAUCAGAUAGCUCACAUCCUCCCCGUCCCCGCUUCUUACCGCUGCGUUAAUGGGCCACGCAUCCUUGCCCUUUUGCCACCGCAUUGGGCCGCCUCCGCCGGGCGCAUGCCUUUGGGACACGGAAACUAAGGGCAAUAGCAGUGCAAGCUAUAGGGCCCAUACCCCUAGCCCAAAGUCAUAGUUCAAAGACACUCACCCCAUAGUGGAAGCACCUAUAUAUGUGUAGCUUAAUUAGAUAGAGACGCAGGUGAAGGAAACGAAGCCCACAGUGGGCGAGACUCUAUGCGAGGACACGGGUAGCGCACCCAAAUUUAUUUUCCUCACCUACCCCUCACCCUCAGCGCAUCUCCUCCUUCGCCUCGCCUUCUCUUCCCUCGUCGUGCUCUCCUCCCUCGCGGCGGACGUCGGGGACACCGCCGCUGUGCGCCUCGCCUCGCCGUCGACC


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

370

LEP:

75.2%

ME_num:

105

MEP:

21.34%

HE_num:

16

HEP:

3.25%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

flag_leaf

Tau :

0.92

Avg Expression:

3.49

Tip: OSA-LNCN2987 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated1.002432720202350.0220018946662231
2Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day-1.283764818369970.00101355068392469
3Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae-1.142385374892240.0276956642975956
4Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day-1.280058119227833.56423506567726e-05