Chr:
Chr2
Start:
15912877
End:
15914223
Strand:
-
Ref_name:
OSA-LNCN2982
Sequence
(OSA-LNCN2982.1):
AUUUAGUUUAACACCGUAUAGAAUAUGCUUGAGAACAGCAAUAAUGCUUCCUAUAAAUGUUCUCCAUUUAUCUUAGCACCAUUAUAGAACAUGCUCGCUUUUUACUGAAUUUAUAAAUGGGCUUAUAUAUUGAUAUACAUGCAAAUAGACCCUCCAAUAAACUUAUUUCGAGAAUGGACCCUUUGCUCAACACCAUCAUGAAGGUGCCAAGGUACAAUAUCUAAGCGCCAUACACAUUGGCGCUGAGAACUUUGGCGAGCUGCACGAAGAACACGUGAGCAGGUGGUCAUCACCAAAGCUCUUGGCGCUGAUCACAUAUGAAGCUUAAAUGUGGGAUAUAAUAGGCAACAAGCUGAUAAGUGGUGUAGUGGUUUGGCGGCCUCAUGCUUUCCUCAACGUCCUGGGUUCGAGUGUUCAACCUUAACCCCCCCUCCCCCCCUCUCUUUUUCUCUUUUUAAUGGUCAGCUCUACAUAUACAGACAUGAAUCGAGGAGUGCUUGUUGGUCACUAAAAAAAAGAAAAUAAUAAAAAACUGUUGCCGCUGAGAACUUUGCUACGCUGGCAUGAAGUACACGUGAGCAGUUGGCCAGUAGCAAACCUCUUGGCGCUGACCAUAUAGGAAGCUUAAAAGGCUUGUGGGGUACAAUAGGUAACAAGCUGAUAAGUGGUCUAGUGGUUUGAUGGCCUCAUGAUUUCCUCGACAUCCUGGGUUCGAGUGUUCAAGCUGUGAGUUUUUCCCUUUUAUUUCUCUUAUUUUAAUGGUCAGCUGUAUGCGUGCAUACAUGACUCGAGGAAUGUUUGCUUUUAAAAAAUAUAUAUGGUACCUUUUGGCCACUAAAAAAGAAAAUAAAACAAGUUAGACCAGCCAAGGAUCAAACUCGGCUCGCCGACAUGGCACGGGGGACAUCUUAUCACCACACAAUUUUUCUACGAUUGUUUAAUUAAAACUGUUAGCUUGUCAUCCUGGAUAUUACAUUAGCGCCAACACCUUCUGCGCGGACCAUGUGGACUUCAUGCCAGCUUGGCCUUUCUCAGAACCGAAGUGUAUGGUUGGCGCCAAGAUGUUGUACCUCGGCACCUUCAUCAAUGGUGUUGAACAAAGGGUCCACUCUAAGUUAAUUGGAGGGUCUAUUUGUAGAAUAAGAAUACAAGGGCCAAAAUGUACAAAAUGCUGCAAACUCACAAGCUUCGACUGAAGAAAUGUUACGACAUCUUGUAACCUGCCACAGAAGAAGUCCUAAACAAAACAAACUGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
29.07%
ME_num:
MEP:
69.92%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.68
Avg Expression:
2.44
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.81004308617977 | 5.41060191705786e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.73562636215737 | 1.14493444660563e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.25347824720586 | 0.00081032670235052 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.12383815764364 | 0.0180421634256597 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.19082620015872 | 0.0092973717495545 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.6769680799804 | 3.70355859612977e-06 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.95308768623247 | 4.4215030801269e-06 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.47236257532831 | 3.04752276387147e-05 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 2.25032756823692 | 0.000582649968414912 |
| 10 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.01676369946307 | 0.00790977084387138 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.60545803209402 | 0.00010178837963866 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.9765499136629 | 5.45017875772938e-07 |