Chr:
Chr2
Start:
15608807
End:
15611851
Strand:
+
Ref_name:
OSA-LNCN2973
Sequence
(OSA-LNCN2973.1):
CACCAAUGCAAUUUCAGGAGAAGUACCAAAUCCAACACAAGGAACAACCGAGUCUGUUACAAUAGUGGAGGGGUUUUGAGGUAGAAAAUGAUAGGAUAAAAGGCUAGAAGGUUCUAGUAGCUUCUAGACAGGUAGAGGAAGAGGGAGAGUAAAGAUCGACAAGGAACCAAGCCCGGUUCCAAAUCGCCGCCGAGAAGCCCCUCAGCCGGUUCUGUUCGUUCUCUGUUCGAUCCCCUCUCUGGUGCUGCUCCUGCUGCUUAUAUAAUGCUCCUGAUUUGCUUGCUUCGGCCUUGCUUUGAAAGUGGUUGACAGCCCACAGGCAGCCCAUUUGGGUUUCUAACAUACCGGCAUGUCAUUCACACAGAAAAAUAGUGGGACCGACAUGUCAUUCACACAGAAAAAGUGGGACCCAUCGACAUGUGGGCCCCACAUGUCAUCUCGUGUGUCGGUAGGACAAGCGGGGAGGCGGAAGGCCGGCGAAGGCCAUCAGUGCGCCGCUGGCUUCCGUGGGUCCCGUCCCCCCGGCGACAGCUGAGUUCCAACGUGGUGGAGGCCGGCGACGGGUUUGGGUGGCGAAAGCAGGAUCGCGGACGGCGGGAGGCGAGGAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
74.19%
ME_num:
MEP:
24.8%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.85
Avg Expression:
1.75
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.0744046245469 | 0.000271571763464634 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.69742046934633 | 0.00148152737565239 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.89563718008403 | 4.84195297113071e-08 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.22066015986537 | 0.00016191441843009 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 2.72678634727761 | 0.00275100716706013 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.7984800734983 | 0.000671760734520111 |
| 7 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 4.92078992326531 | 0.0241703171410776 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 3.52933786466719 | 6.69319879396198e-06 |
| 9 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 4.81035276879138 | 2.69348393715481e-08 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.26589948362663 | 1.28068084636699e-05 |
| 11 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -4.59100476359659 | 0.00762955595364967 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.74148612893252 | 0.00142041836838464 |