Chr:
Chr2
Start:
14964258
End:
14978338
Strand:
+
Ref_name:
OSA-LNCN2967
Sequence
(OSA-LNCN2967.1):
GUCGUCGUCAUUGUCCCCAUCACUGUAGUCGCUGUCGCUGCGGCCAGCCUGAACUAUGGAACUACCGAGGUCCCCGAGGUGGGGGCGAUCAGAUCAAGUUGUUGAAAGCUCUAGGGCAGCCAGAUCCAGUUGCUUCUAACCUCCAAAAGGCCAGAUCUGGCGCCCUUAAGGUGGCGGCGACUGACCCUGACCUUGAACGAGUGACAAUGACACUGGCGAUGGAGGCAUGUGGAGGAGAGCCGACGAACGGGACAGCCACACAAAGACAGAUGUGCCAUCAGUCCCAACCCUGACCGUGACCGUAACCACAUGCCGCAAAUCUGGCUAUCCCCACCCCAGAGGCGAAGGGCGAAAGACGGAAGGCCGACGCUCGUGAGGAGGAGCUGGUGGCCGCUCAUGGAUCUAUAAGUGGAGGGAGAGACGAGGAGGUGGCUGGUACUCGGGGUCGUAGACGGUGGCGACAACGGUGCUUGGGAGGCAGACAUGGAGAUGAGGAGACAAUCGGUAUUGGAUCCACCACCCUCAGGGUCAGAGUGGCAAGAUCUAGCCGCUGCGCGCCACCACCAUGUACUAGAUGGCUGGAUCCAUUGUCUGGGAAAGGAAGAGAGAUCAAGAUAGAAAGAGAGGCAGUGAGAGAGAGAGUUUGAGAAACUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
8.13%
ME_num:
MEP:
89.23%
HE_num:
HEP:
2.44%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.67
Avg Expression:
3.84
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.60191791440404 | 4.32975151141286e-18 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.26232433710635 | 6.26873841171408e-17 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.4106086197695 | 3.96116826131007e-20 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.92064204157078 | 1.22124492148491e-11 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.48060555364791 | 7.40372381426111e-14 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.62256160024667 | 2.97626296788925e-21 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.39292449970727 | 1.59873375444519e-19 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.96170785616695 | 9.01903550908644e-06 |
| 9 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 1.25391770050793 | 0.00247457329052511 |
| 10 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 1.40558750888518 | 0.00137843028952094 |
| 11 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 1.49069414798594 | 8.55441165544818e-08 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.25640276888166 | 2.24494788348212e-26 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.68339816999733 | 9.67577884122062e-22 |
| 14 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.5323596440549 | 0.00238445683639261 |
| 15 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 2.56635516938871 | 0.000810953362450917 |
| 16 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.94398015071742 | 0.000816425958002391 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.07491390447369 | 2.37529749490965e-21 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.96740278097491 | 1.90596724372476e-27 |