Chr:
Chr2
Start:
14941631
End:
14962105
Strand:
-
Ref_name:
OSA-LNCN2966
Sequence
(OSA-LNCN2966.1):
UUCUAUCCUACACAGAUCCUCCCCUUCCUCCUUCCUUCCCCCUUCCCUUCCUCCUCCCUCCCAUGGAGACGGAUGAGGCCACUCCUCCUUCCUUCCCCUUCCCUUCCUCCUCCCUCCCCUAGGAACGGAUGAGGCCGCUUCCCCUUCCCUUCCUCCUCCCUCCCCUGGGAACGGAUGAGGCCGCGCUACGCGGACGCGGUGGAUGGACGGAUGCACAUGCGUGCUGCCCAGACGGCCAUCUCUUUUUUUUCUUGAUAUUUUUUGAUUCACUGAGAUGUAAUUUUGUGAUUCAUUGUAUGGAUUUGAGAUGUAUAAUCUGUGAUGUAUUUGAUUUUAGUUUAAAUUUUUAGGAUUUGUGAUGUUUUAGAUUUGUGUGUAAAAGUAACUUUAAGAUUUGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
4.88%
ME_num:
MEP:
25.2%
HE_num:
HEP:
69.72%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.73
Avg Expression:
28.73
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.36203018121732 | 0.014084059787103 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.62966299146614 | 0.00393240430260374 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.25574547985649 | 0.012450625890764 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.51537618395919 | 0.000353175611302237 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.84981079961816 | 0.00047248604694291 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.18153204311278 | 0.0346014318716908 |
| 7 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 4.77968871609357 | 0.00405665960114668 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.37617496551494 | 0.00500163788731252 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 7.60846363241217 | 4.28695277209291e-05 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.57401316367592 | 0.00558834766126039 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.76554866405476 | 0.000374357957631181 |