Chr:
Chr2
Start:
14829751
End:
14836083
Strand:
-
Ref_name:
OSA-LNCN2962
Sequence
(OSA-LNCN2962.1):
GUCCAUCUCCAUCCGUGUACUUUUGUUUAUAACCAGACUGAGCCACAAACUAAGCCUUACCCACUAGACAUGUGGAAGUACGGUAGUGCUUUGCAACAGAGGCCCGAAGACCGGUCCUUAUAUGGCCGAGGUGCUACUAUCAAAACCAUGCACCCCGAGCCCAGCCUAAAACCUUUUUGAGGAUUUUGAAUAGAGGGGGAGGUGUGAAUCCAAUUCCACAAUAAUCCAACAAUUCCAUAGUGUCCAGGUGAUAAGAGUAUUCCCAAAGUCUAGAGUUGUAAACCACCUAAUGUUACCUAAUUAACCAGCGAAGCAUCUAACUAAAAUCAUACUAGUGGUACCAUGAGUAGAGUGUCCACUAGUUGGGGUUUUGUUUAUUCUAGGGUGAACAAGGAAAUAAUAACAAUAACAAUAAUAAGGUCAUAACAAAGGUACAUAGGCAUGGCUAGAUAAAACAAUGAUAACGCGGGAAUUUAAAUAAAGCGAUAAUGCAAUAAUUUAAAUCAAAAUAAUUUUAUAAACUGGGAUUCAAUAUGUUCAAGGAUGAUGUGACUUGCCUUGCUCGCUUUCCCAAACGUCGGCUUCAACUUCCACGAAGAGCGGAUCUUCCGAAGCUACAACGUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
78.05%
ME_num:
MEP:
20.73%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.86
Avg Expression:
1.85
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.03774233342317 | 6.96098078527789e-28 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.89990121871805 | 2.20805929711363e-28 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.76942117803368 | 1.70720734485153e-28 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -7.12953230850048 | 1.00265477639402e-10 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.53760195083582 | 2.34991213870636e-19 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -9.36313221331917 | 3.28891950227249e-14 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -2.14603470505458 | 3.1218218644792e-16 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -5.49786631352466 | 6.49111174154816e-32 |
| 9 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 12_days_after_shift | 2.3082617744175 | 0.045130971448073 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -2.39379968582816 | 4.76638845885331e-17 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -9.7617182270875 | 1.3608227180299e-15 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -5.68634525313084 | 4.06683083713604e-34 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -6.22341248682411 | 1.68610015196654e-21 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -6.07099119021204 | 3.69084850261819e-35 |