Chr:
Chr2
Start:
13972960
End:
13975062
Strand:
.
Ref_name:
OSA-LNCN2950
Sequence
(OSA-LNCN2950.1):
AAUCCAACAACAAUGAAUCAAAUUUGUGAAAAUUCUAAUUGUUGUAUUCUGAUGUUUUCUGAUCUAUUAGAUCGACCCUCUCAUAGAAUACAUAUAGGAGUACAUAGGAGAUAGAAACUUAGAGUACAAUACAAGUAAAAGUAGAUUUAUCUCUAGGAUUCUAUCUCUAGGAUACAUCUUAUCUAUAUAUUUGUAUUUGACUCUUAUCUCUAACUAACAUAUCUAUACUUCUAACAUUCCCCCUCAGUUGUAACCGGAGUGAAGCGAACAAUUGCAACUGGAUUUGAAAUCUUCUAUUUCUUCAUCUUGUUCGACUCACCAUCAUUGAUUGGAUCUCUGAUGGACUCUCCUCUAUUCCCUCUCGCAGUUAUAGCGGGAGUGUCAUAGAUGAUAGCGAUGACACGUACGCUUUGACUAGAGUUUCCGUCAAUGAUUGUUGUUGUAGACAUUCGUCGAUGUAGCUGAUCAUGUAGUAGCCGUGGUUGUAGGUGUAGCCGCAUAUAGCCGAAGGCGAAAAAACAUAUUUAUGACAUGUGUAGCGGUCAUCACAAUGGUGAUGCCAUGUUGAUGCAGUUGUUGUCGUUGUAGAUAACAUGAUCGAUGCCGUAGUCGAUGACGCGGUCGAUGUCGUCGUCGAUGAACCGUCUUGCAGAUUAAUCUGUCAGAGGAGGUGACGUGUCCAUCUACGUGGACGAGUCGGCGGCAGCAAGUUGAUGAAGAUAACUAGUGAUGUAGGAUCGGCGAAGAUGAUCACGUAGUCAUUUAUCGAUGUAGCAGCUGGCUCGAUCUUGCCGUAGACUUGGUGAUGAUCGAUGGAUGACGUUGGUCUUGGAGUAGAUCAGUAGAUGUACAUGCUCGGAGCUGAUUGGAUGGUGUUGCCGUUGCUGCUUGUUGUUGAUCUCCAAGGCUCCAGCGCUGCUCCCGGGCGACACGACAGUACUGAUAUUGGCUUUUACGUGGCUAAUGAAGGAAUUGAUCUAAUCUAUUACUAAUUAAUGGAAAAUAUAUCUAAUGAGAUCGGUGGAUAAUCUAAUAUAUAGAUGAUAGGAGAGGAUAGCUAGCUAAUGUGUUGCCCAAGGAGAGCUUACGGAUUCAUCUCAUCUCGCUAGGGCAUCACGAAGGAUGAUGGGUGGCAUCACGAAGGAUGCUUGGAGUACAAUACAAGUAAGAGUAGAUUUAUCUCUAGGAUUCUAUCUUUAGGACUCUAUUUUAUCUCUAGGAUAUAUCUUAUCUCUAUAUUUGUAUUUGACUCUUAUCUAUAACUAACAUAUCUGUACUUCUAACAAAAAUCAUCCCCAAAAAUUAUAAAACAACUAAAUCACCCAGGUCACUGCUCAUCAGAGGCCAAGCACACCGCUUCCCUAAGGCCAUGGCGGCUUGGCGGGCGCACCGCCAUGUGCCACAAGGAGGGUGCUACCACCAAGCCGCUUCCGGAGAAGAGGGUGAAGCAGCUGAGGAGAGGACGCCACCCACCAGGGAAGGAGCUCUGCUAGCCGAGUAGAGGGCGCGGCGGCUGAGGCGCUAACCACCAAGGGUAGGGCGCUGCUUGCCAGGGAAGGCGCCGUUGCGAGGGCGCCGUGAGCCAUGGCAGCGGGAGCAGCGACACUGCCGGUGGGGGUGGGAGAAGGGAGGGGGAAAGCCGCCGGUGCGUGGGGAGGGCACCGUGGCUGAGGUGCCGCUCGCCGGGGAAGGCCCAUGCGAGGGCGCCGUGGGCCGUGGCGGAGGGGGAGAGGGAGCGGGAGCACCGGCGCUGCCGGUAGGGUUGGGGGUGGGGGAGGUCGAGGGGAAAGCCGCUGGUGGGGAGGUUGGGGGGGUCAGCAGUGGUGGCGUUGAUUUCUGGGAGCGGACGGAGAGAUGCGGCAUCGAUUUGUGGGGGCCUAGUUUUUUCUUUUCUUUUUCGAACCAGGAACUUGUAUAUUUGGGGAAGUUGGGAUGCAUGCAUCUGGAAGGAAGGGUAGCUGGAGACUGGGAUAAUGUCCUGUGUGGCUUAGAGGUGGGCCAAGGCUAUGAAUGUAAAUUUUUCUAAUGCUAGAGCUAUUUUGCAUUUUUAUUUAGGAAGAGCAUAUUUUAGUAAAGUUUAUAGACUGAUUUAAAAAAUACAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
84.15%
ME_num:
MEP:
13.41%
HE_num:
HEP:
2.24%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.91
Avg Expression:
1.43
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.47112590243931 | 0.00608207567988701 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.02148639687778 | 0.0154856465883912 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.08011162637495 | 0.0159886310411179 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.09699017791365 | 0.0373527264393184 |