RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN2947

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr2

Start:

13463577

End:

13466407

Strand:

+

Ref_name:

OSA-LNCN2947

Sequence
(OSA-LNCN2947.1):

UCCUCCGAGGGCUUGAUACCACUUAGGCUUGAGCAACGGUGACGACCAGUGCUUGACCCUUGGAAUACUCCCGGGUGAAAUGUUGCAAUGGUAUAUACGUGUACUUGCGGAUCACAUCAGUAACUGUAAUAUACCAGGAUUAUUUCUAGUGCUAUUGCUGGGAAUUAUAUAGUAAAGAAGAAAUACCAACAGCUACAACCAGGAGUAAAGAAGAAAUACCAACAGCUACAACCAGGAGUAAAGAUUUCUUUAGUCCCGGUUGUUCUCACCAACCGGGACUAAAGAUUUCUUUAGUCCCGGUUGUUCUCACCAACCGGGACUAAAGAGACGAUCUUUAGUCCCGGUUGGUAAUAACCGGUUAUAGCCACCAACCGGGAAAAGAUCUUUUCCCGCUAUUUCCAAGUUCUUUUUUGAACCGGUUAGGGUUAAGAACCGGGACUAAAGAUAAUAACAGUGCUUAUUUAUUUUCA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

308

LEP:

62.6%

ME_num:

180

MEP:

36.59%

HE_num:

3

HEP:

0.61%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

coleoptile

Tau :

0.81

Avg Expression:

1.68

Tip: OSA-LNCN2947 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12-2.566948138171430.00396647339459685