RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN2942

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr2

Start:

13616037

End:

13620602

Strand:

-

Ref_name:

OSA-LNCN2942

Sequence
(OSA-LNCN2942.1):

UGACAAAAGUUCGCCGCGUGAAUCACGAAGUGAGUUUUUGCCACGAACGCACCCAAUACACUCCAAUAUGUCCUAAAAUCAUGUUUUGUUGAGUUUUUGAAGUAUUUCAUUCCGGUCAAAAACAUCGCUCCUGUGUGGGCCAAUAUUGGCAUUAGUUGACAAAAGUUCGUCGCGCGAAUCACGAAGUGAGUUUUUGUCACGAACGCACCCAAUACACUCCAAUAUGUCCUAAACUCAUGUUUUGGUGAGUUUUUGAACUAUUUCAUUCCGGUCAAAAACAUCGCUCCUGUGUGGGACAACAUUGGCAUUAAUUGACAAAAGUUCGUCGCGCGAAUCACGAAGUGAGUUUUUACCACGAACGCACCCAAUACACUCCAAUAUGUCCUAAAAUCAUGUUUUGGUUCUUUUUGAACUAUUUUAUUCCGGACAAAAACAUCGCACCCGCGUCGGCCAAUAUUGGCAAUAAUUAAUAAAGGUUCGCCGCGCGAAUCGCGACAUGAGUUUUUACCACGAAUGGACCCAAUACACUCCAAUAUGUCCUAAAAUCAUGUUUUGGUGCUUUUUGAACUAUUUCUUUCCGGUCAAAAACAUCGCACCUGUGUGGGCUAAUAUUGGCAUUAAUUGACAAAAGUUCGCCGCGUGUAUCACGAAUUGAGUUUUUGCCACGAACGCACCCAAUACACUCCAAUAUGUCCAAAAAUCAUGUUUUGGUGCUAUUUGAAGUAUUUCAUUCCGGUCAAAAACAUCGCACCCGUGUCGGCCAAUAUUGGCAAUAAUUGACAAAUUUUCACCACGCAAAUCACGCGUGAGUUUUUGCGACGAACGCACCCAAUACACUCCGAUAUGUCCAAAAAUCAUGUUUUGGUGCUUUUUUGAUGUAUUUUAUUCCGGUCAAAAACAUCACACCCGUGUGGGCCAAUAUUGGCAUUAAUUGUCAAAAGUUCGCCGCGCGAAUCACGAAGUGAGUUUUUGCCACGAACGCACCCAAUACACUCCAAAAUGUCCUAAAAUCAUGUUUUGGUGCCUUUUUGAAGUAAUUCAUUCCGGUCAAAUACAUCGCACCCAUGUCGGCCAAUAUUGGCAUUAAUUGACAAAAGUUCGCCGCGCGAAUCACGAAGUGAGAUUUUGCCACGAACGCAACCAAUACACUCUAAUAUGUCCGAAAAUCAUGUUUUGCUACUUUUUAAACUUUUUUAUUCCGGUCAAAAACAUCGCACCCAUGUCGGCCAAUAUUGGCAUUAAUUGACAAAAGUUCGCCGCGUGAAUCACGAAGUGAGUUUUUGCCACGAACGCACCCAAUACAAUCCAAUAUGUCCGAAAAUCAUGUUUUGGUGAGUUUUUGAAGUAUUUCAUUCCGGUCAAAAACAUCGCUCCUGUGUGGGCCAAUAUUGGCAUUAAUUGACAAAAGUUCGUCGCGCGAAUCACGAAGUGAGUUUUUGUCACGAACGCACCCAAUACACUCCAAUAUGUCCUAAACUCAUGUUUUGGUGAGUUUUUUAACUAUUUCAUUCCGGUCAAAAACAUCGCUCCCGUGUGGGCCAAUAUUGGCAUUAAUUGACAAAAGUUCGUCGCGCGAAUCACGAAGUGAGUUUUUGCCACGAACGCACCCAAUACACUCCAAUAUGUCCUAAACUCAUGUUUUGGUGCUUUUUUGAAGUAUUUCAUUCCGGUCAAAAGAAAAUCGCACCCGUGUCGUCCAAUAUUGGCAUUACUUGACAAAAGUUCGCCGCGUGUAUCACGAAGUCAGUUUUUGCCACGAACGCACCCAAUACACUCCAAUAUGUCUAAAAAUCAUGAUUUUGGUGCUUUUUUGAAGUAUUUCAUUCCGGUCAAAUACAUCGCACCCGUGUCGACCAAUAUUGGCAUUUAUUGAGAACGGUUCGCCGCGCGAAUCACGAAGUGAGUUUUUGCCACGAACGCACCCAAUACACUCCAAUAUGUCCUAAAAUCAUGUUUUGGUUCUUUUUGAACUUUUUCAUUCCGGUAAAAAACAUCGCACCCGUGUGGGCCAAUAUUGGCAUUAAUUGACAACAUUUCGCCGCGCGAAUCACGAAGUGAGUUUUUGCCACGAACGCACCCAAUACACUCCAAUUUGUCCAAAAAUCAUGUUUUGGUGCUUUUUGAACUAUUUCAUUCCGGUGAAAAAUAUCGCACCCGUGUCGGCCAAUAUUGGCAUUAAUUGACAAAAUUUCGUCGCGCGAAUCACGAAGCGAGUUUUUGCCACGAACGCACCCAAUACACUCCAAUAUGUCCAAAAAUCAUGUUUUGGUGCUUUUUGAAGUAUUUCAUUCCGGUCAAAAACAUCGCACCCGUGUCGGCCAAUAUUGGCAUUAAUUGAGAAAGGUUCGCCGCGCGAAUCACGAAGUGAGUUUUUGCCACGAACGCACCCAAUACACUCCAAUAUGUCCAAAAAUCAUGUUUUGGUGCUUUUUGAAGUAUUUCAUUCCGGUCAAAAAUAUCGCACCCGUGUCGGCCAAUAUUGGCAUUAAUUGACAAAAUUUCGUCGCGCGAAUCACGAAGCGAGUUUUUGCCACGAACGCACCCAAUACACUCCAAUAUGUCCAAAAAUCAUGUUUUGGUGCUUUUUGAAGUAUUUCAUCCCGGUCAAAAACAUCGCACCCGUGUCGACCAAUAUUGGCAUUUAUUGAGAAAGGUUCGCCGCGCGAAUCACGAAGUAAGUUUUUGCCACGAACGCACCCAAUACACUCCAAUAUGUCCUAAAAUCAUGUUUUGGUGCUUUUUGAACUUUUUCAUUCCGGUAAAAAACAUCGCACCCGUUUGGGCCAAUAUUGGCAAUAAUUGACAAAUUUUCGCCACGCGAAUCACGACGUGAGUUUUUGCCACGAACGCACCCAAUACACUCCGAUAUGUCCAAAAAUCAUGUUUUGGUGCUUUUUUGAUGUAUUUUAUUCCGGUCAAAAACUUAACACCAGUGUGGGCCAAUAUUGGCAUUAAUUGACAAAAGUUCGCCGCGCGAAUCACGAAGUGAGUUUUUGCCACGAACGCACCCAAUACACUCCAAAAUGUCCUAAAAUCAUGUUUUGGUGCCUUUUUGAAGUAAUUCAUUCCGGUCAAAUACAUCGCACCCAUGUCGGCCAAUAUUGGCAUUAAUUGACAAAAGUUCGCCGCGCGAAUCACGAAGUGAGUUUUUGCCACGAACGCACCCAAUACAGUCCAAUAUGUCCAAAAAUCUUGUUUUGGUGCUUUUUCAACUUUUUCAUUCCGGUCAAAAACAUCGCAUCCGUGUGGUCCAAAAUUGACAAUAUUGGCGUUAGUUGACAAAAGUUUGCCGCGCGAAUCACGAAGUGAGUUUUUGCAACGAACGCACCCAAUAAAGUCUAAUAUGUCCAAAAAUCAUGUUUUGGUGCUUUUUGGACUUUUUGAUUCCGGUCAAAAACAUCGUACCCAUGUCGGCCUAUAUUGUCAAUAAAUGACAAAAGUUCGCCGCGCGAAUCACGAAGUGAGUUUUUGCCAGGAACGCACCCAAUACACUCCAAUAUGUCCAAAAAUCAUAUUUUGCUGCUUUUUGAAAAUUUUCAUUCCGGUCAAAAACAUCGCACCCAUGUUGGCCAAUAUUGGCAUUAAUUGACAAAAGUUCGUCGCGCGAAUCACGAAGUGAGUUUUUGCCACGAACGCACCCAAUACACUCCAAUAUGUCCUAAAAUCAUGUUUUGGUGCUUUUUUGAAGUAUUUCAUUCCGGUCAAAAACAUCGCACUCUUGUCGGCCAAUACUGGCAUUAAUUGAGAAAGGUUCGCCGCGCGAAUCACGAAGUUAGUUUUUGCCACGAACGCACCCAAUACACUCCAAUAUGUCCAAAAAUCAUGUUUUGGUGCUUUUUGAACUAUUUCAUUCCGGUCAAAAACAUCGCACCCGUGUCGGCCAAUAUCUGCAAUAAUUGACAAAAGUUCGCCGCGCGAAUCACGAAGUGAGUUUUUGCCACGAAC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

445

LEP:

90.45%

ME_num:

19

MEP:

3.86%

HE_num:

27

HEP:

5.49%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

embryo

Tau :

0.96

Avg Expression:

5.28

Tip: OSA-LNCN2942 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN-2.404779799547324.95887158280187e-35
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN-1.038206525227453.15507845138093e-11
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-5.417880064121193.93305383100752e-59
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA-1.642216348109911.22069036873861e-10
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN-6.312166413786251.68526381456094e-30
6Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA-1.060883203967178.79142605102554e-10
7Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN-2.237641776692411.34867416042899e-33
8Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA-1.897382543035732.26228624261329e-20
9Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-4.928608774329955.18673951557675e-75
10Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-1.510362229004257.03476722257575e-26