Chr:
Chr2
Start:
13611617
End:
13612485
Strand:
-
Ref_name:
OSA-LNCN2941
Sequence
(OSA-LNCN2941.1):
CUUUUUGAACUUUUUGAUUCCGGUCAAAAACGUCGCACCCAUGUCGGCCAAUAUUGGCAUUAAUUGACAAAAAUUUGCCGCGCGAAUCACGAAGUGAGUUUUUGCCACGAACGCACCCAAUAAAGUCUAAUAUGUGCAAAAAUCAUGUUUCGGUGCUUUUUGAACUUUUUCAUUCCGGUCAAAAACAUCGCAUCCGUGUGGGCCAAAAUUUGCCAAUAUUGGCAUUAGUUGACAAAAGUUCAUCGUGCGAAUCACGAAGUAAGUUUUUGCCACGAACGCAACCAAUACACUCCAAUAUGUCUAAAAAUCAUGUUUUGGCGCUUUUUGAACUUUUUCAUUCCGGUCAAAAACAUCGCACCCAUGUCAGCCAAUAUUGGCAUUAAUUGACAAAAGUUCGCCGCGCGAAUCAGGAAGUGAGUUUUUGUCACGAACGCACCCAAUAAAGUCAAAUAUGUCCAAAAAUCAUGUUUUGGUGCUUUUUGAACUUUUUGAUUCCGGUCAAAAACAUCGUACCCAUGCCGGCCAAUUUUGGCAUUAAUUGACAAAAGUUCGUCGCGCGAAUCACGAAGUGAGUUUUUGCCACGAACCCAACCAAUACACUCCAAUAUGUCCAAAAAUCAUGUUUUGCUGCUUUUUUAACUUUUUCAUUCCUGUCAAAAACGUCGCACCCAUAUCGGCCAAUAUUGGCAUUAAUUGACAAAAGUUCGUCGCGCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
81.5%
ME_num:
MEP:
10.37%
HE_num:
HEP:
7.93%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.96
Avg Expression:
18.99
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.67411943687052 | 4.7057316660014e-59 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.45444483526776 | 6.1105225179314e-27 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.07312405506611 | 7.32001788050587e-101 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.65121265171527 | 1.95126553451469e-10 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.32181861521457 | 7.69035479456696e-63 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | -1.13325590859819 | 1.58254308805843e-18 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -2.22129345216324 | 4.47534693169753e-51 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.25998123880637 | 2.19941008614846e-25 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -2.00170469674771 | 1.58509532949118e-42 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.42056791618038 | 1.40924626452564e-24 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.56019490969019 | 2.17248112060554e-105 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.6808242035852 | 8.08474980935699e-22 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.67740954019329 | 3.75974455823288e-89 |