Chr:
Chr2
Start:
13633241
End:
13641066
Strand:
-
Ref_name:
OSA-LNCN2940
Sequence
(OSA-LNCN2940.1):
GCACCCAAUACACUCCAAUAUGACCUAAAAUCAUGUUUUGGUGCUUUUUCAACUAUUUCAUUCCGGUCAAAAACAUCGCACCCGUGUGGGCUAAUAUUGGCAUUAAUUGACAUAAGUUCGCCGAGCGAAUCAUGAAGCGAGUUUUUGCCACGAACGCACCCAAUACACUCCAAUAUGUCCAAAAAUCAUGUUUUGGUGAUUUUUGAACAUUUUCAUUCCGGUCAAAAACAUCGCACCUGUUUGGGCAAAAAUAUGCCAAUAUUGGCAUUAAUUGACAAAAGUUCGCCGCGUGUAUCACGAAGUGAGUUUUUGCCACGAACGCACCCAAUACACUCCAAUAUGUCCAAAAAUCAUGUGUUGGUGCUUUUUGAACUAUUUCAUUCCGGUCAGAAACAUCGCACCCGUGUCGGCCAAUAUUUGCAUUAAUUGACAAAAGUUCGCCGCGUGUAUCACGAAGUGAGUUUUUGCCACGAACGCAACCAAUACACUCCAAUAUGUCCUAAAAUUAUGUUUUGGUGCUUUUUGAACUAUUUCAUUCCGGUCAAAAACAUCGCACCCGUGUCGGCCAAUAUUGGCAUUAAUUGACAAAAGUUCGCCGCGCGAAUCACGAGGUGAGUUUUUGCCACGAACGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
95.73%
ME_num:
MEP:
3.46%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.98
Avg Expression:
1.67
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.80323717143323 | 0.0106199934450123 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 4.23639721787577 | 0.0322840615376856 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 4.34076718623965 | 0.0088808607362369 |