Chr:
Chr2
Start:
12376884
End:
12377238
Strand:
.
Ref_name:
OSA-LNCN2922
Sequence
(OSA-LNCN2922.1):
GCACUCUCUCUCUCCCACUCCUCUCCCUCACUCCUCUCCCCACCUCCUCUCCCUACCCCUCCCUCCUGGCGGCGGCAGUGGUGACGGCGACGGUUUCCUCCUCUUCUCCCUCACUCCUCUCCCCACUCCUCCCUCUCGACGGCGGUGGAGCACUCAAGCAACAGGGGAGGGUGGAGGAGGCGUGCGAAGGCACAGAUCCGACGGCGGCGGCCAUCGCCCGCGCGGAUCCUACAGCGGCCACCCUCCACCCACGUAGCAACGACGGAUCUGGCGGUGGGGAGGCGUGGUUGCAUCGCCUGUGCGGAUCCGACAGCGGCCGCCCUCCCCCCGCGUGGUGGCGGCGGAUCCGGCGACGGCGACUACGACGGGAGCGGGCGAACCUGGCCGCAUCUAGCCCCCUACCUUGUUCUCGCCGGCGUCGACGGCUUCAAGCAACGACGGUGAAGAUGACAGCAGCGGCUUCGAGGGUUUUCAACCAUGCAAUAUUGUUGGAUUACACAAGCCACACUAAACUGCAAUAGAUUUGUACCUGAGAACAAACGCUGGGCCAGGCAAGAAUCCCUCUCCCACGCGACCACGCCGUGUCGUUUCUCUGACCUAUGGAAACG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
94.72%
ME_num:
MEP:
3.66%
HE_num:
HEP:
1.42%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.98
Avg Expression:
2.26
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -4.71840378556841 | 0.0150562557973918 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.01427494998446 | 0.0245835652698786 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.21177484389606 | 0.0358279964529242 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -4.12641430136728 | 0.0193852828590321 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.82499462534019 | 0.0288307667870944 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.42929940266828 | 0.0295673196044596 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.67387095099516 | 0.0155540010156631 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -5.40528015691297 | 0.00172045079414658 |