Chr:
Chr2
Start:
11453517
End:
11461901
Strand:
+
Ref_name:
OSA-LNCN2898
Sequence
(OSA-LNCN2898.1):
GCACAAACAGCGACUAGAUCUAUAGCGGCACAAUUAAGCAAAGCUAAAAGGAGGAUGAAGGGAGAUCACCAAUGAUGAAGUUCACGAAGUUGUUCCUGGAGUUCAAAUCCUUGAGGGGAUUCUACUCUCCGUUGAGGAGCUCACUAAGAGCCGGGUCUUUGCUAACCCUUUCCUCAAGAGGCUGCACUAAGCACUCCUCUUUCCACUAAGGGGUAUCUCUUUCCUUGCGGAGGCGAGAUCCGGCCUUCACAAACUUCUCCCGGCCAACCACACGUAGAUCGGUGGCUCGGGACUGACACCUAGCCGUUUAGGAGUCCUCAACCUCCAAGAGUAACAAACACCACACAACUCUUGGUCAAACCCUAGUGCUCAAGAUCGAGUGAAACACACACUAAGCCCUCAAACACCAAAUCCACAACCACCAAGAUCCACCACACAAAGAACGAGGAGGGAUUUAAGAGAGGGAGAAAGAGCUCAAAGAUCCAAAGCACCUUAGCACCAAGCUCAACCCAAAGUGAAUGAGAAUGAAAUGAGUUGGGUAACCCUAGAAAAGGGUUAGGUGGGGGGUAUUUAUAGAAGCCCCCAAAAUGUGGCCGUUGGGAGAGAAUCUUUUUAUCCCACCUCGGAAAGUCCGAGGUGACAUUGGAUAGUCUGAUGUUUUUGACCCCCAAGCAGGCCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
94.11%
ME_num:
MEP:
4.88%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.97
Avg Expression:
1.42
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.87405418358721 | 0.0368051823783626 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 5.51325386829299 | 0.000301389283085715 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 5.18437395269212 | 0.000623701061067301 |