RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN2873

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr2

Start:

10515444

End:

10519698

Strand:

-

Ref_name:

OSA-LNCN2873

Sequence
(OSA-LNCN2873.1):

CUCGCCCUCCUCCCUCUGCGCGCCGCCACGCUCUCCUCCUCGGCUCCUCCCCUCGCAUGCGCCGUCGCCACCGCCACCUCGCCGUUCUCCUGCCCUCACGCGCGUUGCCUCGCCUCUCCUCGCCGUCCUCCUCCACUCGCACGGCAUCGUUUCCAUCGCAGACUCACCAUCUUCCUUCACUCGCGCACGUCGUCGUCAUCGCAGUCUCGCCCUCCUCCAGCCAUCGUCGCCGACCCACCGCUGCCUCUCCCUCCCAAUGAGGUCUAGAGCUGUGAAAGGUCGACGCCAUCAGUCGAGGUGCCGCUCCCCUCCCUCCUGUUCUAAUUCAUGUCCUUGCGCUGACCAGCCGACCAUUAGCACAGAGGCUGCAAUGUAAGUCUGUUCUACCUCAUCAUUGAUUAUUUCCCAUGCAUUCACUUGAGGUUUUAUAGGAUCCACCAUCUUGCCUUGGUCCCAUUGAGUUACUCAUGGGUUAGGAUGUACAGCAGAUUAGGCAGAGGAUUGUCUUCCAUUGCUGCAGUUUGCAUCCGCUGUCAGGCUAAGCCAUCCAUUAAGUUUUAUCCUCGCUGUUAUGGCUGCUUGCAAGGCUGCAAGAUUCAGUUAAUGUCCUCACUGUUAAGGAUGGCCGCAGCUCUGCAAUAUUCAAAUGGUAACAGAUUAGUUGUUGCAAGAUUAACUGUCCACACAAAACAAGUCUUUUAAUGCUUCUAAGGCACAAACAAGAUAUGAGGACAUGGUGUGUGCCAUGCUGAUGCAGGUCUUCAGAUGGGUGCACAUUAAGUUCCCUACACACACUGACUAUUAAAAAUGAAUUUUUUUUAUUUUGUUUCAUGGUUUCUAGCUAUUUUUAGUACCAUCUAAAUGAUCUUAUUAGGCUUAAGUUUUGAUAUUUCUCACUGGGACCUCGCUUUCUUCAAUUCGUCGACUUAGGCAGGUUGUAUAUUUCUAUCAUUGGAUGAGAUAACUAUAUCUCAGGUUAGCAAUCUGCACUAAGAACUCUUGCAGAUAUAUUAUUUCGUUAUCUAAAUAUAUUGAUUUGUUCCUCUUUCAAAAGGUUAAACAAUUAUGCAAUACAAUAUGAUUUCUGUGCAAACAUGUCCUGCUACUAAGCUCAUCUGCCGAAAAGAAAAGUCAAAUCCUGAAUAUAUUGCCUCUCAACCUCACCCAUGGUCUUUAUACAUACUGAUGGUAGCUUUUAGUGGACUUUGUUCACUUGAAAGUGUGAAUAAAACUAAUCUGCAAUGGAAACAUAUAGCGGUAAGACAUCUCAUUCCUCCUUUUCUUUUUCUUUUGUCUUCUUGUGCAGAAGUGGAACAUAUCUUUCUAAGUUCUGUUUUUCUUCCAUACGAAUCAGUUACUUUUCUUAAAACAUCACAUGAAGUCAUCCUAAACUAUAUAGAACUGAAAUUUUAGCUACCAUUGACCUAUGCUGUGGCCAUUGGACCUUUGGCAUGCUAUUUUUGUCCCUUAAUUUGGUUUGUCCUCUUAGCUAGAGGCACUAUAGCUAGGUUCUCUCUUUAGGAGCACUAAUGCAUUUUGGGGAAGUAGGGUAUCUCUCCUUAGGUGUGCGAAUUCAGGCACUAAAAACCAUAUACUUCUGUUAUAGUUUUUUUUCUACAAUUGAAAUAGUUAUUGAUAACAGAAAUAUGCUUAACAUGCUACAUACAUAGUCAUAUAACUAAAAUGUGAUAAUUCAAAUUGAAGCCUAUGUACCAUUGGAGCAACUACUGUGUUCCAAAACUCAUAUAUUUUAUUACAACAGCCAAGUAGGCUUUCAGUUAUUGACAGCCAGUUGGGGAUAAUAGGAUAUUAUCGAAUGAGGUAGUUUUUAGUGUAGGAACUACGAUCCAUUGAUAAUGUUUCGCUGAAUGCAAAUUAAAGGAGGCUUAAGUGUCUAUACAGAUGUCUCCAGAUUUUUACUAUAAAGUGCCAUGGUAGAAUGAAAAAAGCUUGACUAUGUGAAGUUAUUUUUUUUUCUCAGCUACCUGUGUUCCAAAACUCAGAGAGUUCAUUUCAACAGCCAUUUCUUCCCCCUUGCCCAGUCCUAAUUAUUUGUUGUGUUCAUUCUUUCAUGCUGGCUCUAAUCAAUCUGGCCUGUUGUUGCCAUUUCCUACACAUCCACUAUCUUGCCCCUCCUGCGAAUCAGUCAGCUAACACCGUUUGAUAUGCACCACUACUUAAACCGUCGAUCCUCCCUCUGAGUUCCGAUAAGAUGUUUCACAUAUUACAUGUAUAUGUAGCUGAUAUAUAUGAAGCCCAUGAUAUCUCUUAUUUGUUCUUGGUUUCCUACUUAUUGUAAGUUCCAUAUCGAUGAUAUAUCUUCUUUCAACAGCCACUUGCCAAUUGUUGUGUUUCUAUUUGGAUCGUAUGGAAGUUCUUUGUUGUUUACUUGAAGAGGUAAUAAUCUUGGUCUUCUGAAUGCUCACCACAUGUCCACGAUAGUAUGCUACGGGCAGAUGCUACAUCUCUUGAGUCUCCUCAACUUCCCUCCCUUUUCAUCAGAUAAUAUUUUAUUUGUUAAUUUGCUGUUAUCUGGUAGUUAUUUCUUUAUGGUAAAAGGCUACAUCUUUACCUGAUCUUUCUUGCACAAUAACCAAUACUACCAUGUCAAUCAAUGGCUAUGGAACUUACUGACAAUCACAAGGAAUGUUGCAUAUCUAGCAACAAGAAAUUCUAUACUUCAGUUGAAGAUUUUGAUAUUGGCUAGAACUUUACUAGACCACAAAUACACAUCUUUACAAUGUCUUCAUUAGGUCAGUUCAGGCUCUGUGUAUAACAAGCUAAAUGGCACUAUGUUGAGACAUGCCCUGAAUAUAAACGGUAGUAUCAAUACCAGAUGUAAAUGGCUAAAAUUGUUGAUAUGAAUAGUCCAUAUUUUCUUUUUUAUCUACAUUUUGGGCAUUUAGAUAAUAUUUACUUUUUUAGAAUGCUAUAUAUGUGUAAUAGGUACACUAGAGAGUAGAGAUAGAUCAAGAGGUGCGAUGUCUGUACUAGAUGCGUACUCUUCUCAAUUGUUAUCACGAGCAGUGCUGCUUGAGAAAUCAUCAAGUUCAAUAUGUACCUUAUGGGUUAUUAUGUGUUCUUGAUGCUAUCAGCCUUAUUUAUGGUCUCUUUUUGUUCUCAGAUGGUAUCAAUCAAUAUUAUUAACGGUUUAUCUUUUCUGGAAGUACUUUGUUUGUAGGUAACUAAAUAACAAAAACAAUUGGAGCUGAUGACAUAUGGGAUUUCAAAAAAUGCACAUGCUAUAUAUGUGGAGUCUGGAGAUAUGUUUUUUUUAUUUGACAGGAAUCUAGAGAUGUGUAUGUUCACCGGGUGAAUGUUUGUUCAUUACAUGUGCAAUAAUUAUAUUGCAAGGCUCAGAACAUUGAGUUGAUCUUUUAGCUAGAAAAUCAUACAGCCAUACUAGCUAAUUUAUACUUAUAAUUUGGUCCGCCUUUGUGCUAAAUUAUGUUUUCACAACAAAAUGCUAGCUUACAUAUAGUUCUUAUCUCAUGUAUGAUUACAAAUUACCAGCUAACAACUUCCU

Sequence
(OSA-LNCN2873.2):

CUGUGAAAGGUCGACGCCAUCAGUCGAGGUGCCGCUCCCCUCCCUCCUGUUCUAAUUCAUGUCCUUGCGCUGACCAGCCGACCAUUAGCACAGAGGCUGCAAUAUUAGGCAGAGGAUUGUCUUCCAUUGCUGCAGUUUGCAUCCGCUGUCAGGCUAAGCCAUCCAUUAAGUUUUAUCCUCGCUGUUAUGGCUGCUUGCAAGGCUGCAAGAUUCAGUUAAUGUCCUCACUGUUAAGGAUGGCCGCAGCUCUGCAAUAUUCAAAUGGUAACAGAUUAGUUGUUGCAAGAUUAACUGUCCACACAAAACAAGUCUUUUAAUGCUUCUAAGGCACAAACAAGAUAUGAGGACAUGGUGUGUGCCAUGCUGAUGCAGGUCUUCAGAUGGGUGCACAUUAAGUUCCCUACACACACUGACUAUUAAAAAUGAAUUUUUUUUAUUUUGUUUCAUGGUUUCUAGCUAUUUUUAGUACCAUCUAAAUGAUCUUAUUAGGCUUAAGUUUUGAUAUUUCUCACUGGGACCUCGCUUUCUUCAAUUCGUCGACUUAGGCAGGUUGUAUAUUUCUAUCAUUGGAUGAGAUAACUAUAUCUCAGGUUAAACAAUUAUGCAAUACAAUAUGAUUUCUGUGCAAACAUGUCCUGCUACUAAGCUCAUCUGCCGAAAAGAAAAGUCAAAUCCUGAAUAUAUUGCCUCUCAACCUCACCCAUGGUCUUUAUACAUACUGAUGGUAGCUUUUAGUGGACUUUGUUCACUUGAAAGUGUGAAUAAAACUAAUCUGCAAUGGAAACAUAUAGCGGUAAGACAUCUCAUUCCUCCUUUUCUUUUUCUUUUGUCUUCUUGUGCAGAAGUGGAACAUAUCUUUCUAAGUUCUGUUUUUCUUCCAUACGAAUCAGUUACUUUUCUUAAAACAUCACAUGAAGUCAUCCUAAACUAUAUAGAACUGAAAUUUUAGCUACCAUUGACCUAUGCUGUGGCCAUUGGACCUUUGGCAUGCUAUUUUUGUCCCUUAAUUUGGUUUGUCCUCUUAGCUAGAGGCACUAUAGCUAGGUUCUCUCUUUAGGAGCACUAAUGCAUUUUGGGGAAGUAGGGUAUCUCUCCUUAGGUGUGCGAAUUCAGGCACUAAAAACCAUAUACUUCUGUUAUAGUUUUUUUUCUACAAUUGAAAUAGUUAUUGAUAACAGAAAUAUGCUUAACAUGCUACAUACAUAGUCAUAUAACUAAAAUGUGAUAAUUCAAAUUGAAGCCUAUGUACCAUUGGAGCAACUACUGUGUUCCAAAACUCAUAUAUUUUAUUACAACAGCCAAGUAGGCUUUCAGUUAUUGACAGCCAGUUGGGGA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

453

LEP:

92.07%

ME_num:

27

MEP:

5.49%

HE_num:

11

HEP:

2.24%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

crown

Tau :

0.88

Avg Expression:

3.16

Tip: OSA-LNCN2873 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA)2.266345756943960.0253385813165899