Chr:
Chr2
Start:
10093016
End:
10095387
Strand:
-
Ref_name:
OSA-LNCN2864
Sequence
(OSA-LNCN2864.1):
AUAUCUUCGUUCCUCAACCAGCGACGACGACGACCUCUUCUCUCCCCCCCUUCCCUCCCGCCCCUGGUUUAGCUCUAUAUACGCCCAAUCCAGCAUGGCGUGCCGCCGAAUCGAGCCCUUAUCUUGGCCGCUAUCGACCAUGGUCAGCCCUUAACCUAGCUUGUAUAUAUAUACAUGAACGCACAAGUCGUCUCAGUAGCCGAGUAAAGCAACCGUACGCUUCGACGAUCAGCUAGCGUGCAGCAUGCCUGCAUAUGCAUAUAUAAUGCAUGUGACCCGAUCGUUGAAUGCUUGAACACCGCGUGAUCGAUGUUGCAUAUGCUGCAUCUUGGAAGUUUCUCCGUACGUUGACGUAGUGCAGCAACGAAUAGCCAAGCUCAGUUCGCACUAUUUGUAGCUUCGAGAGGGCCGAAAUAUGUAUUGAUCGAAGAGGAUUAAGCUUAGCACAUAUAGUUGCAUAUACAUGGGCAGCGCGGGAGGCGGCGGCUGGGACGACGACGACGACGGCGACGAGCAGUGCGCCACGCCGCCGCCGCCGCGGUCGUUCUCGCCGAUGAUGAUGACGGAGGCAGGCGACCAGGACGAGAUGCCGACUUCCUUGUUCACCACACGAGGUAAUUCAACAAGCUCAGUCGCAUCCAGCUCCAAAUGUUUGUUCAUUUUUUUUUCUUUUUUACUCCUUUGAACUUGAUUUACGUUCUUCUUAAUUAUGGCUUAUCAUCGAAAGCUUAAUUUUCAUCGCAUGCUUCUCUUAAUUACAGUUUAUCUUCUAAUUAAAUGCGUUUGUAACAAAUAUAUAGCUUCUUUCAAAAGUUAACCAAUAUUCCCUCCCUCUCAAAAUUUUGCUAGUUCAUUUCAUACUUACGUUAUCAGGCACUACUUAGCAUUAUUCCGCAUGCAUCCAUAUUCAUCUAUACAGACACAUAAGUGACUACUAAUUAAUGAGCUGAUAAACAUAUGGCUGUUUUGCACAUGUAUGGUGUUUAUUCUCUCUCCGGCCAGAGGUUUGGCUCUGGCCAUAUAUAUUAAUUAUCAAGAUAGGAGACAUAUAUACGCACACCGUGUGACCAUACGAACCUGAUCCGUUAUAAACGUACGUAUAUUGGAGUGUGUAUGUAUGGAUCGACCAGCAGCAAAUUCAUUGGCAGCACCUACAUACAAUGUACCCCACCUAGAAGUAUUGGUCGCAAUUGGUGGACAGCGAAAUUAUUGUUGGUGCUCAGAAAAGGCAUCCAUAUUGAUAUUUUGCUUGUCUCGUACUACGUGCGGUUUGGCCGGAAGGAUUUGACUUUACCAUCAGUACAGAAAAACGUCUAUAUAUGGUGGUUAAUUGGUUUGUCCAUAGCUAGAUUUGAUAACUAUAGUCCAGGUAAGACAAUUGACAGUUCUGGUUUUUGAAAGAAUUAAAGAUGAGCAUGCAAUUCGUUAGUGAACACAUUUCUUAAUUAAUUAAUUACUCUAUAUAUUACGGUAUAUAGUGGUCCUCCUUGUUUCUUUUAUUUUUGUUAUCCGUUUUCCUGUUUCACUUCUCUCUUGUUUCUUUUUGUCCAUGGCUCCAAGCGCUUUUUCUUUUUCAUCCAGGACGUUUUGUUUCACUUGGUUAUCAGCGUAUAUUUGUUUUCAUCCAGCACAUUUGUUCAUUCUAUAUGUACACCAGUGUUCUUUUAUUAGCCCUUAGAUAGAAAGCAAGAAAUUUGUGUUUAUUCUGUCCAUGGUUUUUGGCGAUUUUUCAUCCCACGAUAUUUCAUUGUCUAUCCAUACGUGUUGAAUAUUAUAUUGUCGUUUUCUAAACCUAUAGGCAAAGCACGUGAGAUUUGUAUUGUUUUUCCUGUCCACGGUUCCAAGAGCCUUUUUAUCCUGCGACAUUUCUUCCACCUGCUAAUUGCGUGUGGAAGACUAUACUACCAUUGUCCUUUUCUUAGCCCAUAGGCAGCACAAAUAUUUGCGUUGAAACAAAUAGGGAUUUUAUUUCAGAAAAUUGGAAAAUAAUAGUGGUACUUAAUUUUGUUAAAAAAAACUAUCUGUGAUUUUAAUUAAUCAAUAUGUAAUAUAAUUCUCAAUAUGGGUUUUAUGACUAUUUGUUUGCAUUUUUUAUAUCUCAGAGUUUAAGUUGUUAAUAUACCAUAUUUUGGAACAUAAAAAUAUGAUGUCGAAAAUCAUCACACAAAAAUUUAGCUUUCAAUUACUCGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUGUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
48.98%
ME_num:
MEP:
41.87%
HE_num:
HEP:
8.94%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.86
Avg Expression:
5.52
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 5.34751905082944 | 1.17721519404455e-13 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 4.89289126543985 | 2.831542933985e-11 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 5.25122473569619 | 2.43111273090983e-12 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 6.63229547279937 | 5.86076458226635e-19 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 5.23508140479919 | 1.25236715232604e-12 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 7.20315750574112 | 4.17522409519921e-26 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 3.74808777427705 | 1.26069420147051e-05 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 5.56875075217262 | 1.84292063102891e-15 |
| 9 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 3.51416395048674 | 7.45509079044078e-11 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 5.27488711285823 | 4.24075899237779e-13 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 6.16566927482132 | 2.72283650462653e-19 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 5.16429815412744 | 3.76659393387126e-13 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 1.30372551527167 | 0.0373944258502956 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 1.36415162966528 | 0.0432968465808359 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 1.54603493924745 | 0.00696153431879505 |
| 16 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 2.52720002680393 | 0.00170667622278293 |
| 17 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.56440973767727 | 2.74085007318513e-11 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 5.31295186022412 | 2.09430168666109e-13 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.79719699930177 | 1.29078616135576e-06 |