Chr:
Chr2
Start:
9996337
End:
9997529
Strand:
-
Ref_name:
OSA-LNCN2861
Sequence
(OSA-LNCN2861.1):
AUGAGAAGAUCUGACAGUGAAGUAUGCAGAUAAGCAAGCUAGCAUUUUCCCUUUCAUCAGUUUUGAAGUUCAGUAACUGGAGAAUGACUGCAAUACCCACUGCUUGCUGUCUUCAUCAUGGAGGUGACACUACUUGGCUUGGCUGCUCAAUCUACCGUGCUAAGAGGGAAGCAAGAAACCAGGAAAAGCAUGUUCUUAUGAUCUUGAUCUCAUUAGGCUCCACCUAGGACCUGUGUCAACAUCUGAGGCCACCUGGCAGUGCAGUCCUCAGCCUGGUUGUAUGCAUCCACAGCCAAUGCUCUCAGCCCAGCCACACUGCUCACACUGACCCUCAUGGUGAGGCCGCUCAGAGGUGGGGGUCUCGGCCAGGCUGCAGACGCUCUGAUGCCUUGACCGCCCACGUCUCUUUGCUCCAUUAACUUGUUGCCCACCUCCAGCGACACUAAUGAUGCCGCCGGCCACUACUACUGGCUGCUGGAGAGAUGUGAGAUUUGGUAGUGCAACAAUUUAAUAUUCACGUAAGGACAAAAUCAAUAAAUCACCCUUAUCUAACACCGUUGCCUUCAAAUGUAACAGAAGAGGUAUUUCGAAUUUUUAGACCAACUUGCUGGUAUAUAUUAGAGGUGAAAUACUGAAAUGUUUUGUUGAUACCAUCAAAAUUGUAGUGGUACUGAUGCAGUUUUAUCUACUAAUUAACAAUUCAAAGCACCUUAUCUUUAAAUGUAUGCAGCAUGCACAUGCCAUGGCCCAUGAGAUAUGCACCUAUUGAGCACUACGAUUAGUACUAGCUAGGAAGGGUAUAACCAAUAAACCAAUCAAGUAUGGUAAAAUCCUUAUCUACUGUAUUUUGAACUAAACCAUUUUAACAUGAAUAUUUCAUAGUUCAUACUCCUCAGUCCCAAAAUAUAGCAACUAGGACAGAAUUGGACAUAUCCUAGUACUACGAAUUUGGACAGGGGUGUCCAAUCUGGUCCUAAGUUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
1.02%
ME_num:
MEP:
58.54%
HE_num:
HEP:
40.24%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.69
Avg Expression:
15.15
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.17002984318535 | 0.00424608862783413 |
| 2 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 1.010001004039 | 0.0174454816585077 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.06404498945029 | 0.00378493679890325 |
| 4 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 1.72224583853208 | 0.00312767139899734 |
| 5 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 1.72217369072536 | 0.00319874910885471 |
| 6 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 1.72207385563431 | 0.00314482155069496 |
| 7 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.31430815621671 | 0.000832937926816496 |
| 8 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.31828621177395 | 6.69838041201555e-05 |