Chr:
Chr2
Start:
8202265
End:
8202735
Strand:
-
Ref_name:
OSA-LNCN2831
Sequence
(OSA-LNCN2831.1):
AUGCGUUGUUAGCAAAAACAUACUACAGUAGGGUAGGUUCACCCAGAUUUCGUUUCCUUUUAUUAUUGAUAUCAAGAUAAGCUAUCUACUGGCUGUGUAUUUGCAGGACUGAUAUCAAUAUAAGGAUAAAUGGAAAUUGGACUGGCAUGAUAGAUACACAUAAGACCAGAACAACAUCACUAAGAAAUGACAGAAGAAAUUCCAAAUUGGCACUGCAUCUAUCUGUUUGUGUUGCAAUUGUGCACUCCUAUCUAUCGUGUUGCAAUUGUAUACUCCUAUACUCCUAUCUAUCUCCUGGUCUGCUUGCGUCCAUUCUGAUGUUCGAUAUGUAGAUAUGUAUGGAGUAGUGGAUUGCACCACAGGAUGUUAUUGUUCAGGAUUGCUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
67.28%
ME_num:
MEP:
31.91%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.89
Avg Expression:
2.97
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.18311512058977 | 0.0111667504650815 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.47103828626679 | 0.00927998511206034 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.47103056736185 | 0.00674457337288581 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.41794206587356 | 0.00229050230846119 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.037029943254 | 0.0383135131132846 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.27974703420978 | 0.0019522201958819 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.04200572686637 | 0.0334922423417549 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.95565727094728 | 4.58669693657343e-06 |