Chr:
Chr2
Start:
7130026
End:
7138348
Strand:
-
Ref_name:
OSA-LNCN2815
Sequence
(OSA-LNCN2815.1):
CCAAUAAUUAAAUUAAUUUGCUGCAAGGCUCGGAAUCUCUUUUAGAAUGGACCUACACAAACACACAUCGAUCUAGCCUAUUAUACAGUCCGUAACAAAAUAAAUUCAUUUUUAGAUAAACAAAGUUCACUUUACUAUCCUCUAACUACCCUGCUUUGUAAAUCGAUAAAUUUUAUCUCUUUAUUACCCUUGCCUACUCUCUCUCAUCAACACUACCACUCUCUCAUCAAAACUAGUAUCAUUUUUACUGAUAAGAGGUAUUUUAGACAUCCGUACCAAAGUGCAUAACAAACUGGCUGACUCUCGCAUUGCCCCUCCCCCUUGGGCGACACCGGAGGCGACGCCCCUGCCGACGCACGUUCCCCCCUCCUCCCUUCUCCGCCUCGCCGCCGCCUGAGCGGCCACCGACAAAGCCGCGCAGCGCAAGGAUGGCGGCGGCGGGGCUUCGUCUUCGUGCCACGCUCGGGCAAAGGGGGGAUUGCUCGGGGCCGCACAAAUCGCCUAGAUCUGUGCCUCCUGGCCAGAUCUAGAGGCGAGGCCGAAUGGUGGGGCGGUGACUGGCGGUGCUGGCGGCGGUGGUUAGAGGUGUGGCGGCGGCGGAGGAGACCACCAAAUCCGAGCCUGGAUCUGGCGGGGUGGGGGCCGGCGACGGCGUCCAUUGACGGCGGCGGCGGUGCCUGGUGGUGGUGGCGGCGGGCGGCCGGAUCCGGCUGGACGGUGGAUGGCCUGCGGUGGUUGGGUUCGGCCGCGGCGACGAGUUGCAGGUGACGGCGUCAGCGGCAGAGGCGCGAGAGGCUGCGAUCGGCGGCGGCAAGCGCACUAGCGCGGACGCAUAGAGGCCGUGACGGCAGCGGAGGCUCGGGAGGCCACGAUAGCAGGCGCGACAGCAGCACGUGCCUAGACGGUGGCAAGUGCAGUGACUGUGGCUGGCACGACGAUGGUAGCUAGCACGGCGGAGUGGCCAGUAGCUGUGUGGUGCGAGGAGGGCGACGAGGCCGGUCGGCGCGCGGUGGCUGCGCAACGGGAGGUAAGGCCGGUGGAGGCUAGCUAGGCCGAAUGGUGGGGCGGCGGUGACUGGCGGUGCUGGUGGCGGCGGUUGGAGGUGUGGCGGCGGAGGAGGAGACCGCCAAAUCCAAGCCUGGAUCUGGUGGGGUGGGGGCCGGCGACGGCGUCCAUUGACGGCGGCGGCGGCGCCUGGUGGUGGCGGCGGCGGGCAGCCGGAUCCGGCCGGACGGUGGAUGGCCUGUGGUGGUUGGGUUCGGCCGCGGCGGCGAGUUGCGGGCGGCGGCGUCAGAUGCAGAGGCACGAUAGGCUGCGGUCGGCGGUGGCAAGCGCAACAGCGCGGACGCAUAGAGGCCGUGACGGCGGCGGAGGCUUGGGAGGCCACGACAGCAGGCGCGACGGCGGCGCGUGCCUGGCCGGUGGCAAGUGCGGUGACUGUGGAUGGCACGACGAUGGCAGCUAGCACGGCAGAGUGGCCAGCAGCUGUGGGGUGCGAGGAGGGCGACGAGGCCGGUUGGUGUGCGGUGGCUGCGCAGCGGGAGGUGAGGCCGGUGGAGGCUGAGCCCAGUAAGGUGGCGCACGUGAAGACUGGCCGGCUGGGGGCACCGGUGCGGUGGUGCCCACACAUCGACGUAGGUUUAAAUGGCGGUGGAGCAACGGUGCAUUUGUGGUAGAUCGGCAGGUGAAACCCCAGCCUGGCCUUGGCCGGGCCAGCAACGAUAACGUUCAAGCGUCAUUCCCCUCCUGAGGGUGUUGUCGUGCUGUCUCACCCCUCAAGUGUGGAUGCAGGGCAAAAGCCCAGUCUCGAUUCUCUCUCUAAGACCUUGACGGACGGCGGCGGCGGUGUUUCGUCGCUUCUCUCCUUAGAGACGUCGUCUAGGCACCCCCUUGCCGAAACCCCCCUUGCAAUUGGUGCAAACUUGCUCUAGAUUCUCAUCCUCUUGUAUUGGCAUCCUAGCUUUUACAAGUUGGUCAUGUCGGAGGGCCUAGGGGUAGAGGAGUUCCAUCUUCACUCUCACCCUCUCUCCCUAAAUCCUGAAGACUUGGAUAGAGUGGGGUUUUGUUAGUUGUAAGGGUCGGGUUCUGGGCGAUCUCGGCGGUGUUCCGUUGUUGGCCUAGCGGCGGCCGGUCCUGUGCUAGCCUUCUCCUGGGUUUGUGUGUUGGCGUUUUCGGUAUGUGGGUGGUGGUAUACUUUUUUCGUUUUCCUGGUUACAACCUUCCAGGGUUGUAAUCUCGUAACUUUUUCCUGCUCUAUCAAUAGAACUUCGCACCGUCUAGUGCGAGUUGUAAAAAAAAAGGUAUUUUAGACAUUUUCGUUCUAUCUUCAUUUUUUUUCUAAGAAUUAAAAGAUAAACUUAUUUAGAAACGAGAGAGUAAAUUAGCUAGAGAUCGGUGAGUGCAGUAGGCACUAUGCUUGUGAAACAGGUAAC
Sequence
(OSA-LNCN2815.2):
ACUGAUAAGAGGUAUUUUAGACAUCCGUACCAAAGUGCAUAACAAACUGGCUGACUCUCGCAUUGCCCCUCCCCCUUGGGCGACACCGGAGGCGACGCCCCUGCCGACGCACGUUCCCCCCUCCUCCCUUCUCCGCCUCGCCGCCGCCUGAGCGGCCACCGACAAAGCCGCGCAGCGCAAGGAUGGCGGCGGCGGGGCUUCGUCUUCGUGCCACGCUCGGGCAAAGGGGGGAUUGCUCGGGGCCGCACAAAUCGCCUAGAUCUGUGCCUCCUGGCCAGAUCUAGAGGCGAGGCCGAAUGGUGGGGCGGUGACUGGCGGUGCUGGCGGCGGUGGUUAGAGGUGUGGCGGCGGCGGAGGAGACCACCAAAUCCGAGCCUGGAUCUGGCGGGGUGGGGGCCGGCGACGGCGUCCAUUGACGGCGGCGGCGGUGCCUGGUGGUGGUGGCGGCGGGCGGCCGGAUCCGGCUGGACGGUGGAUGGCCUGCGGUGGUUGGGUUCGGCCGCGGCGACGAGUUGCAGGUGACGGCGUCAGCGGCAGAGGCGCGAGAGGCUGCGAUCGGCGGCGGCAAGCGCACUAGCGCGGACGCAUAGAGGCCGUGACGGCAGCGGAGGCUCGGGAGGCCACGAUAGCAGGCGCGACAGCAGCACGUGCCUAGACGGUGGCAAGUGCAGUGACUGUGGCUGGCACGACGAUGGUAGCUAGCACGGCGGAGUGGCCAGUAGCUGUGUGGUGCGAGGAGGGCGACGAGGCCGGUCGGCGCGCGGUGGCUGCGCAACGGGAGGUGAGGCCGGUGGAGGCUGAGCCCAGUAAGGUGGCGCACGUGAAGACUGGCCGGCUGGGGGCACCGGUGCGGUGGUGCCCACACAUCGACGUAGGUUUAAAUGGCGGUGGAGCAACGGUGCAUUUGUGGUAGAUCGGCAGGUGAAACCCCAGCCUGGCCUUGGCCGGGCCAGCAACGAUAACGUUCAAGCGUCAUUCCCCUCCUGAGGGUGUUGUCGUGCUGUCUCACCCCUCAAGUGUGGAUGCAGGGCAAAAGCCCAGUCUCGAUUCUCUCUCUAAGACCUUGACGGACGGCGGCGGCGGUGUUUCGUCGCUUCUCUCCUUAGAGACGUCGUCUAGGCACCCCCUUGCCGAAACCCCCCUUGCAAUUGGUGCAAACUUGCUCUAGAUUCUCAUCCUCUUGUAUUGGCAUCCUAGCUUUUACAAGUUGGUCAUGUCGGAGGGCCUAGGGGUAGAGGAGUUCCAUCUUCACUCUCACCCUCUCUCCCUAAAUCCUGAAGACUUGGAUAGAGUGGGGUUUUGUUAGUUGUAAGGGUCGGGUUCUGGGCGAUCUCGGCGGUGUUCCGUUGUUGGCCUAGCGGCGGCCGGUCCUGUGCUAGCCUUCUCCUGGGUUUGUGUGUUGGCGUUUUCGGUAUGUGGGUGGUGGUAUACUUUUUUCGUUUUCCUGGUUACAACCUUCCAGGGUUGUAAUCUCGUAACUUUUUCCUGCUCUAUCAAUAGAACUUCGCACCGUCUAGUGCGAGUUGUAAAAAAAAAGGUAUUUUAGACAUUUUCGUUCUAUCUUCAUUUUUUUUCUAAGAAUUAAAAGAUAAACUUAUUUAGAAACGAGAGAGUAAAUUAGCUAGAGAUCGGUGAGUGCAGUAGGCACUAUGCUUGUGAAACAGGUAAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.2%
ME_num:
MEP:
51.63%
HE_num:
HEP:
47.97%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.67
Avg Expression:
17.77
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.93839417425609 | 1.15633063777889e-27 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 1.9131216110422 | 3.08183329775948e-46 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.72663621168299 | 1.07220085770317e-38 |
| 4 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 2.19708256741958 | 3.21146176635987e-06 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.20783865510154 | 0.00017382062162195 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 3.38229792927495 | 6.41621000229627e-37 |
| 7 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 1.98457708423433 | 9.71473654394114e-08 |
| 8 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 1.36827730310237 | 0.00451777086983919 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 4.48369778921203 | 3.02241330035514e-55 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | 4.49035430923813 | 0.000876380713364801 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 3.65785529764966 | 1.67891930493846e-34 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 2.56721057746211 | 2.05110577551354e-88 |
| 13 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 4.07601183006211 | 4.02290134282326e-91 |
| 14 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 1.68444904800752 | 3.18012688010265e-05 |
| 15 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | 1.09473833026553 | 0.00342391898048482 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 3.68565993516847 | 3.14989564253741e-11 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 4.22342752422518 | 1.49813987891303e-49 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BXOR1 | 4.23971058204056 | 0.000359929386141904 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 4.57149537834944 | 1.46725359997911e-06 |
| 20 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 4.35657530178081 | 1.27214601931671e-07 |
| 21 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 4.41501488687648 | 5.30481094606687e-08 |
| 22 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 4.22816006649926 | 2.23328302702643e-40 |
| 23 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 3.7693872235558 | 1.23466794678461e-05 |
| 24 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 4.22615048567849 | 3.15413419994705e-40 |
| 25 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 4.22602335845412 | 2.7492890065105e-40 |
| 26 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 1.35502075568029 | 0.00567195566170787 |
| 27 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.44627396772474 | 6.72653431577454e-14 |
| 28 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hN | 1.22256219252078 | 2.3818187599467e-15 |