Chr:
Chr2
Start:
7085565
End:
7089839
Strand:
-
Ref_name:
OSA-LNCN2805
Sequence
(OSA-LNCN2805.1):
CUCCAUUGCGUUAUAUGUGCAUAAAAGGUGGAACCAUAUAUUAAUGAUUUAUAAUGAUUUAUAGAUAACUAUUAUAUGAGUGGGCUAUUACAUUGGCUAUAGAUGAUUUGGAGUAAGUAGUUAGCUAUACUAUUAAACUUGCUCUUAGAGCGAGUACAAUAGCAGUCUACAAGUAAGUUGUAAUCACAUAUAGAGGAGAUAAGAGAUAGAAGGAAAGCGGUUGUAGCCCGCUGCAGCAAGGACUCCAAUAUAUUGUGUGUGUAUAAGAUGUGAGACUAUACAUUAAUGCUGUAGUAUAUGCUUAUAGGUAACUAUUGUAUGGAUGAGCUAUUAGAUCGACUAGGCCAUCGUCGUCGCCAUCCUCCUCUUCCGCUGCCAAGCUCAUCGCCCGCCUCCUCUCCGCGCUAUCGAGCUCGUCGCCUGCCUCCUCUCCGCGACGCCGAGCUUGUCGGCCCGUCUCCCAGAUCUACACCGGAGAGGGAGAGGCCGCGCCGGUGUGGAGAGGAAAAGGGGGAAGGCCACAACGGGGAGAGGAGCGGCGACGUCGUCCUCCUCUCCGCCGCCGCUCUUCCUCGCCCCUGGAGAGAGGAACGUCGAACACCGCCGUGGCUUCCUGCCCACUGCCACUCCGGUCGCCGCUCACUUCCUCCGCCUCAGCGCCGCUACCUCGCUUCCUUCCGCCGGUAGGGAACGGAUAAAGGAGAGAGAGAGGAGAGAUGGAAAGUGAGGAUAGAAAAAAAGACUGGUGGGACCCACUCAAAGGAAUAUGCACCGUGGAGCAUGUAUCUAACAAUGUUCUUGGGUGUUCUUGAGCUAAGUUGGCACACGAGGCUCCACAAAUAUUUGUGACCCACUGCUAAUACCCUAAGAGAGGAGAGAUAAGGAAAACGGGUUACAAAUUUAUAGCCAGCCGCAGCACGUACUCCAAAACACUAUGUGUAUGAGAGAUAAAUUAUUAUCAGACAAUGUAUUGAUUUAACAGUACAGCUCCACAAAUAAGGAAAUGGGUCAUAUACUCAUAGAAAGUAGGUUCUCUAACACCACAACAUCAACAUUGCCAAAGAGUGGUGUGGUGUCAAUUAGAUCAUUAUUCAGAGAGCUUGUUAAUGUGUGAUACAUCAGGAGCAGCUUGAAAUCUCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
14.02%
ME_num:
MEP:
36.18%
HE_num:
HEP:
49.59%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.85
Avg Expression:
24.01
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.9413960007946 | 6.62651960959813e-08 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.68597484416968 | 4.11755785349633e-07 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.42955047876685 | 1.30576342916143e-05 |
| 4 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -1.31900834945008 | 0.00509206301729714 |
| 5 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.25848860872368 | 0.0008419466868998 |
| 6 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.20144706366719 | 6.29141773463268e-15 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.19574415598565 | 1.11665583246626e-05 |
| 8 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -1.77299965383097 | 1.59587178261232e-05 |
| 9 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -10.7830758693477 | 4.02649271301054e-17 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.48894263185843 | 1.88939276734633e-06 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.0058195461583 | 2.06709588030129e-05 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.83159355243738 | 2.69441229438696e-07 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.32291920573686 | 4.12897991042811e-07 |