Chr:
Chr2
Start:
5611303
End:
5611889
Strand:
+
Ref_name:
OSA-LNCN2770
Sequence
(OSA-LNCN2770.1):
CUGAUGCAUCAUCGCUUUGCAUCUGCUUUUUCAGUCUUGUCUUUGCAAAAAGAAACGACGAAAAAAAAAAGAACGGAUGGCAAGUCACAGGAAUAUGCCUGCAGGCUAAAGAUGAUUGGAUUUCAAUGUCGCACAAGUAAUCCUUAACUUCAGAACAGAAGCAUGGUGUUUCAUUUCAUAGCUUGUAGCAAUCAGAUGCCUUGAGUAAUUCAGAAGGCUCUAAAUUCAAGUCGUAGUAGUGGAAAUUCUAAUCUGAUAGUUCAAAAAAUGAAACUACACAACUAGUAAUGUUUCAAUUUAGGAGAAGUUUAUUUGGUGUAAUGUAAUUCAAAUUCUGGUUUGAAAAAGGGGAAAGUGGCAUAGUUAUGUACUUAGGUUAAGUUCUGGAGGUUAUGCUGAUUGCUGAGCUCUGGAGCAUGAGAAGAACAUAUUCAGAAAUAAGAACUACAUCUAGAUAAUCGUUUGCUACAAGACUACAAGAGGAACA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
50.61%
ME_num:
MEP:
47.36%
HE_num:
HEP:
1.83%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.84
Avg Expression:
3.58
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.35494905644492 | 6.28668162088904e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 3.12682089254874 | 0.0148847135161427 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.47007364857385 | 0.0178077810210921 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 3.50380037656988 | 0.00135376274437064 |