RiceNCexp:Browse

OSA-LNCN2763

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr2

Start:

5068134

End:

5068834

Strand:

Ref_name:

OSA-LNCN2763

Sequence
(OSA-LNCN2763.1):

GUUUGCCUUUGCAUCUUUGUGGCUGUUUGAGAUUAUCAUGUUGAUUUAUGAGAUAUAGCAUUAGGUUAUUGCUGCGAACAUGUCGGCGUCGUAGAGAAAGGUAGAAUCUGCAAUGCGCAUAGCCGUCAUUUUUCCUAUGGAAUGGCGAUUGCAAUGCAUGUGAAAUUUACCCAGAGAAGGGAGAUGAGAAAGAUUUGGAAAUAUGAACAGGGCAUGAUAUUUGAAUCUUCAUUUAGAAAUUGCACCAGUUGUUUACACCAUCUAAGUUCACAAUCAGAUGUAAGUUUCUCCUUUUCUUUUUCAUUCUUAAUAUGUCAAAUAUCAUCUUGAAUGCUACACAGUUAUAGUGAAUAAUGUGUGCUCAAACAUAGAGUAAUGCAUUAGGCACUCUGGCCAAAUUGGUUCUUGUGACCAAGUAAAGCAAUUACCUUCCUAGCCUUUUAUAUCAAGAUGCGACAACAAUAUCUUCAGUGAAUCUGCAAAUGUUAAACAUGGCCUAUGCCAGCACUCCAAUUGUUCAUUCCACUCUGCAUGUUACGUAUAGCUUGGAAACUGUUUGAUCAAGACACUGGUAAAUUCUUCUCUUUCUUUGAAUAGUCUUUGGCUACUUGUUCAUCUUCAAUCGUUU

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

423

LEP:

85.98%

ME_num:

MEP:

13.82%

HE_num:

HEP:

0.0%

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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

embryo

Tau :

0.83

Avg Expression:

0.72

Tip: OSA-LNCN2763 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN	-2.75755842614737	0.0198854501631945
2	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN	-1.90695104335687	0.0426667159911769
3	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA	-3.63011953735534	0.0152823125806553
4	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA	-2.7436806763345	0.00861764664417116
5	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA	-3.58207232398622	0.00447901306146085
6	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA	-3.9564743361219	0.00698849945895594
7	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA	-1.97771076527504	0.0163491474029011