Chr:
Chr2
Start:
4962642
End:
4963420
Strand:
.
Ref_name:
OSA-LNCN2759
Sequence
(OSA-LNCN2759.1):
CGACGACACAUGCGUGUGGAUCGAUUCAUCGAUCGAUCGGUGGAUGGACAGAUGCAUGGAAAACCCAUGCUGCUUGUGGUGGCGCUUUGCUAAUUCGGUUUGUUUGUUGGGCUCGGCGUGCAGCGACGACCGCGCGGGCGGGCCGAGCGAAGCGGUGAAUGUGGCGGGCGCGGAUGGCAGAUGAUACGGGGGCCCGGCGGGCGGCGGGCGGCGGGCGAUCCCAUCGUGUGUCCGUCUCCGAGCAUGUUACUCUAUUCCACUACGGAGCACGGGGGCGGGGGCGCGGGGGUUACACCAAAAUCCAUGGCUCAUGAUGCCGAUCGGUGAUGUGAUGCGCGGUGUCGUCGCGCGUGUUAUUAGGACUCCCUCCGCCCUAAUAUAACACAAUUGGGAUCCUCUUCACUGACAUGUGGGUCCAAAGGACUGUGGAGCCCAGUGAACAGCAAACUUAAUACCGAUGUGAAAUACUCCCUCCGAAAAAAAAGGCUAACCCUAGUUUCCGUGUCCAACAUUUGAUCGUCCGUUUUAUUUAAAAAAAUUAUGAAAAAAAAUUAAAAGAUAAGUCACGCAUAAAGUAUUAAUCAUGUUUUAUCGUCUAACAAUAAUGAAAAUACUAAUUAUAAAAAAAAUUUAUAUAAGACGGACAUUCAAACGUUGCACACGGAAACCCAUGGUUUGUCUUUUUUUUUGACGGAGGGAGUAUUCUAUAUUUACGAAUCUGAACAGCUAGAACCAUAACAACAAUGAUGUUUCUAGGAUAAAGUCUUUAUUAAAUUGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
91.26%
ME_num:
MEP:
8.13%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.95
Avg Expression:
1.21
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -3.15993433823346 | 0.0369985306365646 |