Chr:
Chr2
Start:
4716377
End:
4717611
Strand:
-
Ref_name:
OSA-LNCN2757
Sequence
(OSA-LNCN2757.1):
GCUAAGCUUGUGCGUACUGACCUUUAUACCCUUCUCUUUGGCCAGGUGUUCUACUACUCGCUUUUGGAUGUUGGAAUGUCAGCGCGUCAAAACGGGGGAAUAAAGUCGACUUGUCCAGCUUCAAUUGCGUGGAGCGUGGCUGCAAACGAUCCUCUGGAUUUUUGUCCGACGUUAUCCAUUCCCGUUUUAGCAGGCAACGGGUGGCUUUUCACUCGAUUCCCGACCUCGACACCUUAUCACCUGACGUGUGGGCCAUGCACGCACGCCGGUGUGCUCUCCUGCUUUGCACCGGCCGGCGAGCUGCCAACUCCGGCGAGUUUUCUGCUCGCUCGAGCCCGUCUGAGCAAGCGAUCGCCGGCCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
24.8%
ME_num:
MEP:
69.11%
HE_num:
HEP:
5.89%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_elongation_zone
Tau :
0.71
Avg Expression:
5.11
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.22433435193002 | 0.043187009384858 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.50924785032775 | 0.000421629623828298 |
| 3 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.76506013113879 | 0.00183556794259255 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.79823606446368 | 0.0169416852373637 |
| 5 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -1.95725034947716 | 0.000891206714565766 |