OSA-LNCN2754


Function Link


Basic Info

Chr:

Chr2

Start:

4612476

End:

4621508

Strand:

-

Ref_name:

OSA-LNCN2754

Sequence
(OSA-LNCN2754.1):

GCCACAAGGGUAAUAUCACAAAGCAUCUUCACAAGCAAUGGUUGUUGUUGGAAACAAUAGUAGUAACUCGUCAGCAAUGAGAGAACAUAAGAUUCUUCACCCACAUGGGCAAAAUUGAGAAAAAGAAUACUCCUUCAGUGGACCCCCAAAAUCAGCAUUCGUUGUGUAGAAAUUAUUUUGCAUGAAAUAGGUGUAUCAAACAAAACAUGUUUGCCAUUAUAAUGGGUGGAACCAUCUCGAUGCUUAUAUCUCAUAUUCUCAUUAAUAAAUGAGAUCCAUCAAAUUGAAAUUACCCGGUUGGUGCAACUACAGUUCAACUGAAUGAGAUGGGAUUAGGUGGGCAGGCUAUUUUAAAUGUGGUAGACAAAAUAUUGUUUACCAUUUUUGGAAGUUGUGGCUUGUUAAGUGUAGGAUUUAUUAAUUGGGAAUGUGUGUAGGUCAUCAGGAGCUAAACUAGCGAUAAAAUUCCACUUCAAAUAUCGGUAAAACCAGUUAUUAUAUUUGCCAAAACUCAAACAAGAUCCCUUGAAAAAAAGGAUUAUUCAAGGGUACACAUCACUAAUAUGUAUUUUAAACAUUGUCAUAUGACACAAUGCAUUGCCAACUGACUAUGCAUUCACCUUUCAGACACAAUGACUUUAGGGCGUGUUUAGUUCCACAUCAAAAUUGGAGGUUUGAAGAAAAAACUUGGAAGUUUAUGUAUGUAGAAAAGUUUUGAUGUGAUAAGCUAUGCCUAAUGAGAGUUUUUAAAUUUGGAAGUUGGAUAAGCUAAACUCUCAUUUAGGAAAGUUGGAAGUUUGAAGAAAAAGUUGGGAACUAAACUCGGCCUUAAUAUGGCUUUCAGUAAAGGUAGCAACAAAUCGUGGCACAUGUCAACAUCGUUACCACCUAGUAUCAUUUAUAAGUGGGCAGUGGCAGCUCUCUGUACCUUCAAGAUCUUUACUCAUUAAUUGGGAUACAUGCUGUCCUGAAUACAGAACAGGGUAGCAUCUCCAUGACUGGGAAAUAUGGAGUAUAAAGCAAAAACAGGCGAGUAGCUUUCAAUUCAAUAUUGGAGACCAUGUGUAGCUGCCCAGGCCCCAGAAGUCAAUCAAUUCCUUUAUUGGUCAGAUAUAUCAGUCACAACCACCAUACUCAAUAGUAGUAGGCUCUAUCCAAGAAAGUUGAGUUCUGCCAGUUCUCAGAUGUUGGUGAAGGUCGAUUUCAUCCCAACAAGACAAAUACUUCUAAUCCUCGGCUACAGAGGAUCUAAACACACCCUGAGUCGACGAGCAGCGCGAAUUGAAACCGCGGUUGUUAUCGCCGCCAGCCACAC

Sequence
(OSA-LNCN2754.2):

GCCACAAGGGUAAUAUCACAAAGCAUCUUCACAAGCAAUGGUUGUUGUUGGAAACAAUAGUAGUAACUCGUCAGCAAUGAGAGAACAUAAGAUUCUUCACCCACAUGGGCAAAAUUGAGAAAAAGAAUACUCCUUCAGUGGACCCCCAAAAUCAGCAUUCGUUGUGUAGAAAUUAUUUUGCAUGAAAUAGGUGUAUCAAACAAAACAUGUUUGCCAUUAUAAUGGGUGGAACCAUCUCGAUGCUUAUAUCUCAUAUUCUCAUUAAUAAAUGAGAUCCAUCAAAUUGAAAUUACCCGGUUGGUGCAACUACAGUUCAACUGAAUGAGAUGGGAUUAGGUGGGCAGGCUAUUUUAAAUGUGGUAGACAAAAUAUUGUUUACCAUUUUUGGAAGUUGUGGCUUGUUAAGUGUAGGAUUUAUUAAUUGGGAAUGUGUGUAGGUCAUCAGGAGCUAAACUAGCGAUAAAAUUCCACUUCAAAUAUCGGUAAAACCAGUUAUUAUAUUUGCCAAAACUCAAACAAGAUCCCUUGAAAAAAAGGAUUAUUCAAGGGUACACAUCACUAAUAUGUAUUUUAAACAUUGUCAUAUGACACAAUGCAUUGCCAACUGACUAUGCAUUCACCUUUCAGACACAAUGACUUUAGGGCGUGUUUAGUUCCACAUCAAAAUUGGAGGUUUGAAGAAAAAACUUGGAAGUUUAUGUAUGUAGAAAAGUUUUGAUGUGAUAAGCUAUGCCUAAUGAGAGUUUUUAAAUUUGGAAGUUGGAUAAGCUAAACUCUCAUUUAGGAAAGUUGGAAGUUUGAAGAAAAAGUUGGGAACUAAACUCGGCCUUAAUAUGGCUUUCAGUAAAGGUAGCAACAAAUCGUGGCACAUGUCAACAUCGUUACCACCUAGUAUCAUUUAUAAGUGGGCAGUGGCAGCUCUCUGUACCUUCAAGAUCUUUACUCAUUAAUUGGGAUACAUGCUGUCCUGAAUACAGAACAGGGUAGCAUCUCCAUGACUGGGAAAUAUGGAGUAUAAAGCAAAAACAGGCGAGUAGCUUUCAAUUCAAUAUUGGAGACCAUGUGUAGCUGCCCAGGCCCCAGAAGUCAAUCAAUUCCUUUAUUGGUCAGAUAUAUCAGUCACAACCACCAUACUCAAUAGUAGUAGGCUCUAUCCAAGAAAGUUGAGUUCUGCCAGUUCUCAGAUGUUGGUGAAGGUCGAUUUCAUCCCAACAAGACAAAUACUUCUAAUCCUCGGCUACAGAGAGCGGCUUUCACAUGCACAUAGGAGUAGCGGCAGUAGGUGUUCUGAACCAAAAUCGCAGAAGUAUGCGACUGACAAAAGAUCAGGCUGA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

32

LEP:

6.5%

ME_num:

412

MEP:

83.74%

HE_num:

47

HEP:

9.55%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

coleoptile

Tau :

0.66

Avg Expression:

5.30

Tip: OSA-LNCN2754 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN1.22839223864862.11927140839411e-05
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1.144318829061899.75878424197537e-05
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA1.73179699218491.36066224225212e-08
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA1.666545617029555.09017363789869e-09
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA1.678728738556071.59204906647447e-10
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN1.35830002331892.52771184781885e-08
7Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min"1.841775715948040.000345063340893018