Chr:
Chr2
Start:
4612476
End:
4621508
Strand:
-
Ref_name:
OSA-LNCN2754
Sequence
(OSA-LNCN2754.1):
GCCACAAGGGUAAUAUCACAAAGCAUCUUCACAAGCAAUGGUUGUUGUUGGAAACAAUAGUAGUAACUCGUCAGCAAUGAGAGAACAUAAGAUUCUUCACCCACAUGGGCAAAAUUGAGAAAAAGAAUACUCCUUCAGUGGACCCCCAAAAUCAGCAUUCGUUGUGUAGAAAUUAUUUUGCAUGAAAUAGGUGUAUCAAACAAAACAUGUUUGCCAUUAUAAUGGGUGGAACCAUCUCGAUGCUUAUAUCUCAUAUUCUCAUUAAUAAAUGAGAUCCAUCAAAUUGAAAUUACCCGGUUGGUGCAACUACAGUUCAACUGAAUGAGAUGGGAUUAGGUGGGCAGGCUAUUUUAAAUGUGGUAGACAAAAUAUUGUUUACCAUUUUUGGAAGUUGUGGCUUGUUAAGUGUAGGAUUUAUUAAUUGGGAAUGUGUGUAGGUCAUCAGGAGCUAAACUAGCGAUAAAAUUCCACUUCAAAUAUCGGUAAAACCAGUUAUUAUAUUUGCCAAAACUCAAACAAGAUCCCUUGAAAAAAAGGAUUAUUCAAGGGUACACAUCACUAAUAUGUAUUUUAAACAUUGUCAUAUGACACAAUGCAUUGCCAACUGACUAUGCAUUCACCUUUCAGACACAAUGACUUUAGGGCGUGUUUAGUUCCACAUCAAAAUUGGAGGUUUGAAGAAAAAACUUGGAAGUUUAUGUAUGUAGAAAAGUUUUGAUGUGAUAAGCUAUGCCUAAUGAGAGUUUUUAAAUUUGGAAGUUGGAUAAGCUAAACUCUCAUUUAGGAAAGUUGGAAGUUUGAAGAAAAAGUUGGGAACUAAACUCGGCCUUAAUAUGGCUUUCAGUAAAGGUAGCAACAAAUCGUGGCACAUGUCAACAUCGUUACCACCUAGUAUCAUUUAUAAGUGGGCAGUGGCAGCUCUCUGUACCUUCAAGAUCUUUACUCAUUAAUUGGGAUACAUGCUGUCCUGAAUACAGAACAGGGUAGCAUCUCCAUGACUGGGAAAUAUGGAGUAUAAAGCAAAAACAGGCGAGUAGCUUUCAAUUCAAUAUUGGAGACCAUGUGUAGCUGCCCAGGCCCCAGAAGUCAAUCAAUUCCUUUAUUGGUCAGAUAUAUCAGUCACAACCACCAUACUCAAUAGUAGUAGGCUCUAUCCAAGAAAGUUGAGUUCUGCCAGUUCUCAGAUGUUGGUGAAGGUCGAUUUCAUCCCAACAAGACAAAUACUUCUAAUCCUCGGCUACAGAGGAUCUAAACACACCCUGAGUCGACGAGCAGCGCGAAUUGAAACCGCGGUUGUUAUCGCCGCCAGCCACAC
Sequence
(OSA-LNCN2754.2):
GCCACAAGGGUAAUAUCACAAAGCAUCUUCACAAGCAAUGGUUGUUGUUGGAAACAAUAGUAGUAACUCGUCAGCAAUGAGAGAACAUAAGAUUCUUCACCCACAUGGGCAAAAUUGAGAAAAAGAAUACUCCUUCAGUGGACCCCCAAAAUCAGCAUUCGUUGUGUAGAAAUUAUUUUGCAUGAAAUAGGUGUAUCAAACAAAACAUGUUUGCCAUUAUAAUGGGUGGAACCAUCUCGAUGCUUAUAUCUCAUAUUCUCAUUAAUAAAUGAGAUCCAUCAAAUUGAAAUUACCCGGUUGGUGCAACUACAGUUCAACUGAAUGAGAUGGGAUUAGGUGGGCAGGCUAUUUUAAAUGUGGUAGACAAAAUAUUGUUUACCAUUUUUGGAAGUUGUGGCUUGUUAAGUGUAGGAUUUAUUAAUUGGGAAUGUGUGUAGGUCAUCAGGAGCUAAACUAGCGAUAAAAUUCCACUUCAAAUAUCGGUAAAACCAGUUAUUAUAUUUGCCAAAACUCAAACAAGAUCCCUUGAAAAAAAGGAUUAUUCAAGGGUACACAUCACUAAUAUGUAUUUUAAACAUUGUCAUAUGACACAAUGCAUUGCCAACUGACUAUGCAUUCACCUUUCAGACACAAUGACUUUAGGGCGUGUUUAGUUCCACAUCAAAAUUGGAGGUUUGAAGAAAAAACUUGGAAGUUUAUGUAUGUAGAAAAGUUUUGAUGUGAUAAGCUAUGCCUAAUGAGAGUUUUUAAAUUUGGAAGUUGGAUAAGCUAAACUCUCAUUUAGGAAAGUUGGAAGUUUGAAGAAAAAGUUGGGAACUAAACUCGGCCUUAAUAUGGCUUUCAGUAAAGGUAGCAACAAAUCGUGGCACAUGUCAACAUCGUUACCACCUAGUAUCAUUUAUAAGUGGGCAGUGGCAGCUCUCUGUACCUUCAAGAUCUUUACUCAUUAAUUGGGAUACAUGCUGUCCUGAAUACAGAACAGGGUAGCAUCUCCAUGACUGGGAAAUAUGGAGUAUAAAGCAAAAACAGGCGAGUAGCUUUCAAUUCAAUAUUGGAGACCAUGUGUAGCUGCCCAGGCCCCAGAAGUCAAUCAAUUCCUUUAUUGGUCAGAUAUAUCAGUCACAACCACCAUACUCAAUAGUAGUAGGCUCUAUCCAAGAAAGUUGAGUUCUGCCAGUUCUCAGAUGUUGGUGAAGGUCGAUUUCAUCCCAACAAGACAAAUACUUCUAAUCCUCGGCUACAGAGAGCGGCUUUCACAUGCACAUAGGAGUAGCGGCAGUAGGUGUUCUGAACCAAAAUCGCAGAAGUAUGCGACUGACAAAAGAUCAGGCUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
6.5%
ME_num:
MEP:
83.74%
HE_num:
HEP:
9.55%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.66
Avg Expression:
5.30
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.2283922386486 | 2.11927140839411e-05 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.14431882906189 | 9.75878424197537e-05 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.7317969921849 | 1.36066224225212e-08 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.66654561702955 | 5.09017363789869e-09 |
5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.67872873855607 | 1.59204906647447e-10 |
6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.3583000233189 | 2.52771184781885e-08 |
7 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 1.84177571594804 | 0.000345063340893018 |