OSA-LNCN2736


Function Link


Basic Info

Chr:

Chr2

Start:

3727942

End:

3733323

Strand:

-

Ref_name:

OSA-LNCN2736

Sequence
(OSA-LNCN2736.2):

GGCCUGCUAAUGGCCUUGGCCCAUAUGCGGCCCAACAAGGGCGCCGCACCUUAUCCAAUCGGGUGGCUAGGGUUGAAACCCUAGCCCCCAAUUCCACCGAUUCGAUGGCGGCGGCGGGUAUCCUGGCGGCUCAUGCGGGCUAGGCGGCGAGGUUGAUGGGACUCAUCGGCGCGGCGGGGUUGACGACAGAGGCGGAGCGGCGGUGAGGCUACAAGUAGCACCAACGCCGGCGUGGCUGGUUACAGGCCAUAUCCGGCAUCCGGCAAGCGCAGCUCCUUGCUGUGCGCCGGCGGAAUUUGGCUCGGCAUGCGGGCCGGCGAGGUGGACAGCUAUCGGCGGCGGGAGGCCACGGCGGCUUCGACCCCCGUCCCAGUCGCGUGCGGUAGCGCGGGAGGCGUGCCGGCGGCAGGGGGAUGCGGGCGCGGUCUCCUCAGCGUCUCUGCGGGCGGCGGCCGUUUACGGCAAGUGCGGGCGGUCGAUUGAAGACCCGUCGGCUGGCUUUUCAAGGGCGAACCAAUGACGGAAAGCCGAUGGCACGAUUCUGCGGCCAUUGGUGAAGGGGGUGGCCGGCGACGCGUGCUGGCGGCGGCGAGGGCACGACGGUGCAUGCGGGCGUCAUCGACUCGGUUUCGUCGUCGUCAACUUCAGGAGGACGGCGGCGCUGGCAUGAGGAUUUGGGCCGAUUCGUUCGGAAUCGGCAAUCACGUUAGCUAGCAUGCCACUUUGCAGAUCGAAAGCGCGGGAGGG

Sequence
(OSA-LNCN2736.1):

GGCCUGCUAAUGGCCUUGGCCCAUAUGCGGCCCAACAAGGGCGCCGCACCUUAUCCAAUCGGGUGGCUAGGGUUGAAACCCUAGCCCCCAAUUCCACCGAUUCGAUGGCGGCGGCGGGUAUCCUGGCGGCUCAUGCGGGCUAGGCGGCGAGGUUGAUGGGACUCAUCGGCGCGGCGGGGUUGACGACAGAGGCGGAGCGGCGGUGAGGCUACAAGUAGCACCAACGCCGGCGUGGCUGGUUACAGGCCAUAUCCGGCAUCCGGCAAGCGCAGCUCCUUGCUGUGCGCCGGCGGAAUUUGGCUCGGCAUGCGGGCCGGCGAGGUGGACAGCUAUCGGCGGCGGGAGGCCACGGCGGCUUCGACCCCCGUCCCAGUCGCGUGCGGUAGCGCGGGAGGCGUGCCGGCGGCAGGGGGAUGCGGGCGCGGUCUCCUCAGCGUCUCUGCGGGCGGCGGCCGUUUACGGCAAGUGCGGGCGGUCGAUUGAAGACCCGUCGGCUGGCUUUUCAAGGGCGAACCAAUGACGGAAAGCCGAUGGCACGAUUCUGCGGCCAUUGGUGAAGGGGGUGGCCGGCGACGCGUGCUGGCGGCGGCGAGGGCACGACGGUGCAUGCGGGCGUCAUCGACUCGGUUUCGUCGUCGUCAACUUCAGGAGGACGGCGGCGCUGGCAUGAGGAUUUGGGCCGAUUCGUUCGGAAUCGGCAAUCACGUUAGCUAGAUCGAAAGCGCGGGAGGGUCAAGGAUCGAUGGCAGGGGGUGCUCACUG


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

299

LEP:

60.77%

ME_num:

106

MEP:

21.54%

HE_num:

86

HEP:

17.48%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

panicle

Tau :

0.88

Avg Expression:

6.63

Tip: OSA-LNCN2736 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h5.865535810924471.27409618863091e-08
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1.465936423175380.0263588382545466
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN1.782876877629650.00556969543270647
4Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN2.658189935331396.25399116932036e-07
5IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h1.111943071033663.24386485465964e-05
6IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h1.148693098184990.00109810833172794
7WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h3.076596823458253.4066542723528e-06
8Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA1.969825565390260.000922206529962813
9IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB)-1.048822639936090.0269579605309497
10Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min"6.059234975231620.00178702804034562
11Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-2.264259568769560.0342573955739996
12Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min"3.009657563321180.0393294827626435