Chr:
Chr2
Start:
3727942
End:
3733323
Strand:
-
Ref_name:
OSA-LNCN2736
Sequence
(OSA-LNCN2736.2):
GGCCUGCUAAUGGCCUUGGCCCAUAUGCGGCCCAACAAGGGCGCCGCACCUUAUCCAAUCGGGUGGCUAGGGUUGAAACCCUAGCCCCCAAUUCCACCGAUUCGAUGGCGGCGGCGGGUAUCCUGGCGGCUCAUGCGGGCUAGGCGGCGAGGUUGAUGGGACUCAUCGGCGCGGCGGGGUUGACGACAGAGGCGGAGCGGCGGUGAGGCUACAAGUAGCACCAACGCCGGCGUGGCUGGUUACAGGCCAUAUCCGGCAUCCGGCAAGCGCAGCUCCUUGCUGUGCGCCGGCGGAAUUUGGCUCGGCAUGCGGGCCGGCGAGGUGGACAGCUAUCGGCGGCGGGAGGCCACGGCGGCUUCGACCCCCGUCCCAGUCGCGUGCGGUAGCGCGGGAGGCGUGCCGGCGGCAGGGGGAUGCGGGCGCGGUCUCCUCAGCGUCUCUGCGGGCGGCGGCCGUUUACGGCAAGUGCGGGCGGUCGAUUGAAGACCCGUCGGCUGGCUUUUCAAGGGCGAACCAAUGACGGAAAGCCGAUGGCACGAUUCUGCGGCCAUUGGUGAAGGGGGUGGCCGGCGACGCGUGCUGGCGGCGGCGAGGGCACGACGGUGCAUGCGGGCGUCAUCGACUCGGUUUCGUCGUCGUCAACUUCAGGAGGACGGCGGCGCUGGCAUGAGGAUUUGGGCCGAUUCGUUCGGAAUCGGCAAUCACGUUAGCUAGCAUGCCACUUUGCAGAUCGAAAGCGCGGGAGGG
Sequence
(OSA-LNCN2736.1):
GGCCUGCUAAUGGCCUUGGCCCAUAUGCGGCCCAACAAGGGCGCCGCACCUUAUCCAAUCGGGUGGCUAGGGUUGAAACCCUAGCCCCCAAUUCCACCGAUUCGAUGGCGGCGGCGGGUAUCCUGGCGGCUCAUGCGGGCUAGGCGGCGAGGUUGAUGGGACUCAUCGGCGCGGCGGGGUUGACGACAGAGGCGGAGCGGCGGUGAGGCUACAAGUAGCACCAACGCCGGCGUGGCUGGUUACAGGCCAUAUCCGGCAUCCGGCAAGCGCAGCUCCUUGCUGUGCGCCGGCGGAAUUUGGCUCGGCAUGCGGGCCGGCGAGGUGGACAGCUAUCGGCGGCGGGAGGCCACGGCGGCUUCGACCCCCGUCCCAGUCGCGUGCGGUAGCGCGGGAGGCGUGCCGGCGGCAGGGGGAUGCGGGCGCGGUCUCCUCAGCGUCUCUGCGGGCGGCGGCCGUUUACGGCAAGUGCGGGCGGUCGAUUGAAGACCCGUCGGCUGGCUUUUCAAGGGCGAACCAAUGACGGAAAGCCGAUGGCACGAUUCUGCGGCCAUUGGUGAAGGGGGUGGCCGGCGACGCGUGCUGGCGGCGGCGAGGGCACGACGGUGCAUGCGGGCGUCAUCGACUCGGUUUCGUCGUCGUCAACUUCAGGAGGACGGCGGCGCUGGCAUGAGGAUUUGGGCCGAUUCGUUCGGAAUCGGCAAUCACGUUAGCUAGAUCGAAAGCGCGGGAGGGUCAAGGAUCGAUGGCAGGGGGUGCUCACUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
60.77%
ME_num:
MEP:
21.54%
HE_num:
HEP:
17.48%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.88
Avg Expression:
6.63
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 5.86553581092447 | 1.27409618863091e-08 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.46593642317538 | 0.0263588382545466 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.78287687762965 | 0.00556969543270647 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 2.65818993533139 | 6.25399116932036e-07 |
5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | 1.11194307103366 | 3.24386485465964e-05 |
6 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | 1.14869309818499 | 0.00109810833172794 |
7 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 3.07659682345825 | 3.4066542723528e-06 |
8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.96982556539026 | 0.000922206529962813 |
9 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // Paclobutrazol (PB) | -1.04882263993609 | 0.0269579605309497 |
10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 6.05923497523162 | 0.00178702804034562 |
11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.26425956876956 | 0.0342573955739996 |
12 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 3.00965756332118 | 0.0393294827626435 |