Chr:
Chr2
Start:
3342242
End:
3342976
Strand:
+
Ref_name:
OSA-LNCN2729
Sequence
(OSA-LNCN2729.1):
AAAAGAAAUUACCACAAUAGAUUAUAUAGAUGAACUACAGAUUGUAACAUGAUAUUCUAAUAUAGUUCUUAGCAUAAAUUACUGGCAGAUAGUAACAUGAGAUCAUUAUGACAGAUAUAGCGACAAGACUUCCUAUUUACCAUUGACAAUUAAUUAAAAGAGUUCAUCAUUAUCUAAUCUGUGAACAUAUGAAAUCAAAUCGAAACGCACAAGCUACAUAAUUGAACCAUGUCUAAGAAGAACUACCCUACAGAUCUACAUCAAACACAAAACAGAUAUAACAUAUUAAAGCCUGUGUUUGCACCAACCCAUGGCACCAAUAACUCAAUCAAGAGCGGAACAGUAGAUCUGAACAUGCUCGCAACAAGGCCUACAAGAUGGAACACGCUACAAAUCGCACCAAUCACUCAGGCAUGACUAGUUCCACAAUUCCCCAACAGAUCUACACCGAUUUCCCCAAUCGAAUCAUCCAACAAUUCAUCUAACCGUAAAAAUUCCCCCCAAUCAUCAGAACCAACAUCCAAUCCCAAAACCUAACCACGAUUCCACCUAUCGAACCAACCGUGCCCAAAUCACAACCAUCAGAUCUACAACCCCUAAACAUCUCACGAUAAUCACAUCGACAACCCUAACCACCAAUCGGAUCUAGCAACAAAACAACCUCACCCGUCCGAAAUCGAAUCGAAACGAAGCGAGGAGAGGAGAAGCAGCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.2%
ME_num:
MEP:
9.35%
HE_num:
HEP:
90.24%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.74
Avg Expression:
128.97
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.28354932862902 | 6.84888400686102e-10 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.29350887583165 | 3.25655363200062e-10 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.45909101954918 | 8.07256805669974e-11 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.44643538927412 | 2.29958840179202e-11 |
| 5 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 1.28784533679584 | 0.000699800582004137 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 3.26039055065186 | 4.06327071024299e-72 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 1.71694732334256 | 1.97028646421271e-09 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | 1.07944974168362 | 0.0492205565302975 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 1.6412119544107 | 2.87423912302376e-08 |
| 10 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.4169145745589 | 1.98513954933751e-97 |
| 11 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 1.25818724326028 | 4.51747138977339e-14 |
| 12 | 9311 // leaf // control--/--9311 // leaf // salt | 1.68149456997932 | 4.95843494551189e-10 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.15063627525143 | 4.93662333944198e-08 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.05918968575284 | 1.9770905282026e-06 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 1.76652512267826 | 2.55164996701897e-05 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.60244652185153 | 1.58662348397771e-07 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 1.38454721126066 | 1.38451772575972e-05 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 1.69379298617885 | 2.13956587964529e-07 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 1.65262316309406 | 6.16660203429227e-05 |
| 20 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 4.22556695197573 | 1.83409238064144e-48 |
| 21 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 1.48293155394361 | 8.84634699515804e-06 |
| 22 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 4.2254868260748 | 2.37179100744623e-48 |
| 23 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 4.22538310096783 | 1.98267967796744e-48 |
| 24 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.4734221985715 | 6.13197301826048e-07 |
| 25 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 2.17200748439836 | 2.04030926124489e-58 |
| 26 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.93537014855422 | 2.91858479347229e-69 |
| 27 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.17161180617727 | 0.000474031763020609 |
| 28 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.47140240453736 | 6.43557319833586e-11 |
| 29 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.67005675473214 | 1.70367972474526e-19 |
| 30 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.36528964944165 | 0.000323046850600127 |