RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN2697

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr2

Start:

1118080

End:

1119180

Strand:

+

Ref_name:

OSA-LNCN2697

Sequence
(OSA-LNCN2697.1):

UUGUCAACUUGCAAAAAUUUGUUCAAGUUUGUUUUGACUACAAUAUGAACAUCUUAUUUUUAGCAACACAACGGUAGAUAGCUUUACCAAAUAUAUUUUCCUAUACUAGCAGUGAGACUUACUCCCUCCGUCCCAAAAAAAAGACAAACCCUAGUUUUCGUGUCCAACGUUUAACCGUUCGUCUUAUUUGAAAAAGUUAUGAAAAAAUUAAAAAGAUAAGUCACGCAUAAAGUAUUAAUCAUAUUUUAUCAUCUAACAACAAUGAAAAUACUAAUUAUAAAAAAAUUCAUAUAAGACGGAUAGUCAAACGUUGGCACAGGAACCCACGUUUUGACUUUUUUUUUUUAUAAGAUGGAGGGAGUAUCCUUGACAUCAAUCACGAAAUUUCCCUCAUCCCGAGCGGUACGAAUCGCAUCUCGUGGUAGCACCACCAGUCAGGUCUAGCGGAACAAAAACGGAGCUAGUCAGAUUUGGAAUCUGUUUAUACAAUUCCAUCUCCAUUUGAUCGCAGCAUAUUCCUUUCCUGUUGCAAUUAACGCUAGCGUCAUCAUCACAAAGUGCAACUCAUAAUCUCAUACGCAGAUUGAUUUGAUUCUCCGUGUAAGGUAAAAAUACCGACAAAUUACCAUCAUCUUCCGAAAACGUGCAAGCAAAAAAUGGCAAAGGAUUGUCAUGAAAGUUUACACGCUCGGUCGAUUUUUUUCUCCCUGUGUGUGUGAGCCAGGUGACGGUGGGGCCCACAUGGGUAGAGAGAAUACAGGGAAAAGAGGCUUGGGUCCCACGAGACAGCGGCUGGUGGCGGUGAAAAGGAGGACGGCGCGCGAGAUUCGAGGCAGCAGAGGAGGGUUUUGUUUGGCGUUUGGCUCAUGAAUGAAUGGAUGGAUGAGGGUGGGGCCCACGUACGUGUGCGUGCAGGUCCAGGUCGCGUUGGUGCUACGCAGUGUUUGACCCGGGG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

474

LEP:

96.34%

ME_num:

17

MEP:

3.46%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.99

Avg Expression:

0.88

Tip: OSA-LNCN2697 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN-4.694879024687030.016821812008954
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN-4.798214333088010.0107719267854482
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-4.94783480971380.00811070724206876
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN-4.187246121372290.039282658171029
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-4.354236108838760.031832187578233
6Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated4.077905577038040.00842884969367426
7Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min"6.300091465741210.0108588676698259
8Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-4.761081984900990.00939434228686641
9Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-5.239338929520770.00401991516507555
10Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min"6.178833828553930.00877783420516701
11Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA-4.648534794363140.0174973426372681
12Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-5.381330891396380.0021245971033256