Chr:
Chr2
Start:
953446
End:
955652
Strand:
-
Ref_name:
OSA-LNCN2693
Sequence
(OSA-LNCN2693.1):
UCUCAUAUUUGCAUACCAAAAAAUCAUACGAGAGAUGUCUAGACAGUUCCAGUUUCUUAACUCUACGUGGAAACUGAUUAUUUUUUUUAAAGAAAAUGAAGGACUCUACACUUUUAUAUUUGAGCGACUUCUGAAUGCAGAUGAUUCAGAGAGCCCUGAACUGAGACACUGCAUCGUGAUGAUUCUUUCUCUGUUAGUGCAUUUCUUGGAGGCCGUACAAAGAUUCUGCCCUGUUCUUGUGUAGUUUCUUUGGACCAAAAAAACUUUAAGGGAUAUCGUUAAAUUUCUCAUCAAAGAUAAGCAAGGGCUGUGUCCAGCAAUCAACAAUGGCUGGAGCUGGACGGAAGGAAGGAUGGAUGUUUGGUCGGUUGGCCGGAGACAUGAGAGAAAUGGAGGUUGCUUUUGACGUCAAAAUGGGCGGCGGCCACACACAAGUCAGGAUGAACAGCCUGUCAUAACACUGACAGGUCAACACAAGGAGGAGAUAUAGCAUGCAUCCAAAAAUGUAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
80.49%
ME_num:
MEP:
19.11%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.82
Avg Expression:
0.84
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.47709500631426 | 0.0262600280604009 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.71632245915597 | 0.0100428221828077 |
| 3 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 1.85513079980876 | 0.0101411218741762 |
| 4 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.75677588778929 | 0.0265647384351764 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.16715214249979 | 0.0278344407786478 |