Chr:
Chr2
Start:
387383
End:
394459
Strand:
-
Ref_name:
OSA-LNCN2676
Sequence
(OSA-LNCN2676.1):
CCCAACGCAGAGCUCAGCAGUCAGCAAUGCAUCAAUGGUCCACGUUUCUCCAAGCAGGGAAGAGCAUCCCAAGCCUUGUAGUCUAUGUAUUCCCCUGUCUCCUCCAUUUAACAAAUGUUUGCAUAAUUAGAUAAAGACAAUUGAGACGACCAAUGUUGAAUGUCAAUAAGUAGGCCAAAAUUACUAAUUCGUAUGAAGCAACAAAAUACAGGUAUACGUGGGUGUACUGUAGCUGUAGCCGACAACAGAAUAGAAGAGAGCACAAAGGAUACUUACAAGCGGCCUGAUAGCUACAGCGUUGCAUUGCGCCAUAUCGGCCGUGAACUUAGCUGAUAAUGAUAUAGAUCUCAGAUGAUACUCUUUCAGAAAAAAAGCAAACAUUCAGCUGUCCAUCCUUGGGUUCAGAGUUCAGACCAGCAGGGCUGCAUGCAUGCAUUUUGCCACUUGCUGAAUGCGUGAGAAUAUCAUCUAGCUACACCAAAUGUACUACUCCUAGCUCCUUAAUGCAUCCUUAAUUAACUGUAUACUCCAAAUGAAUGUCUUAUCAUCUAUCUGAUUGAGAAAUCAGAAUUUCAGAUCACCAAGAGCUUAAUUACUGUAUGUCCUUCCUGACCUUAUCUGAGCGAUCGAGCUGACUGACGACCAACCGGCAGCUUAUACAGAAACAAUCGAUCGAUGCACAGUUUGAAGAUAGAUAGGGGAUGUAUAGGACAAGAGAGAACACAUGCAUUGAAGUGACAAAAUUAAAAGGAGGGACGCAGCAAUCAUCAGAUGAUACUACAAGCAAAGGAACACUCCACAUGUAAAAAGGCUGCAUGCCACAUCACCCCCUCUGCCUGCUCUUGGCUCUUGCUGCAUCCGCAUGCCUCCAAAAUCAACCGGUUUAUUAAUAACAUUCACCAAGCAUGAACAGAAAUUUACUAAUGGAUCGAACCAGUGCUUGAUUUUUAUGAAAAUGGAUUUAAAUCCGGCCACUACAUUUGAACCGGAAUGUACGUGGCCAAAGGAUUUGUGCUCAGGGUUUUAAAUUUCGAAACUUGGUUUUCUGCCAGAGGUGAGCGAAAGAACCG
Sequence
(OSA-LNCN2676.2):
AUCAGUUUGGUGAAGCACAGACCACAAUGGAGGUAUACGUGGGUGUACUGUAGCUGUAGCCGACAACAGAAUAGAAGAGAGCACAAAGGAUACUUACAAGCGGCCUGAUAGCUACAGCGUUGCAUUGCGCCAUAUCGGCCGUGAACUUAGCUGAUAAUGAUAUAGAUCUCAGAUGAUACUCUUUCAGAAAAAAAGCAAACAUUCAGCUGUCCAUCCUUGGGUUCAGAGUUCAGACCAGCAGGGCUGCAUGCAUGCAUUUUGCCACUUGCUGAAUGCGUGAGAAUAUCAUCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
67.28%
ME_num:
MEP:
29.67%
HE_num:
HEP:
2.85%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
2nd_leaf
Tau :
0.91
Avg Expression:
3.59
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.30702873708341 | 0.00599097549479238 |
2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -4.08615472913686 | 7.9012076958738e-07 |
3 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.70548333017927 | 0.0255953207844383 |
4 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.65681310182803 | 0.0237977496995021 |
5 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 2.4636355853174 | 0.000162483291181898 |
6 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -5.39236013635917 | 1.06761593612303e-07 |