Chr:
Chr12
Start:
26847912
End:
26850315
Strand:
-
Ref_name:
OSA-LNCN2657
Sequence
(OSA-LNCN2657.1):
CCUAGCCGGAAAAGUCUAUUUUCCCUCCCUGAGCUACUGUUCAUCUUCCAGCUCAGGCAGAGCCCGAGCCAGCCGUGCCGUGCAUAGUGCCGCCGCCUCCUCCUUACAAAUCUCGCCUCCCCGUUGCUCCUUUUUCCAAUUUAGUUGAGGGGAAAUAUUCCUCUUAUCCUCCUCUAUCUUUACCCCCCAAAAAUCGGAGCUAAUCGUUGAGUAUCUUAUCCGAAUCGAACUCGUUUUCGAGUUUAUCUCCAAAACCGAGUUUUUGAUUUUCCGGAUCGAUUUCUUGCGGGAGGAGUUCGAUCUCUUCAAUCCAAGGCUAUAAAUAGGACCCCCUAGUCCUCCUCUUUCGUUUGCCCCCUCUCCCGUGAUCUCCCGUGCCUCGUAGCGCCGCCGCCACGUGCUCCACCCCGCCGUCGUCGCCGGCCGAGCUCCAUCCGCGUCGCGCCGCCGCCUCCGUCGUCGCCGCCGGUCGCCGUCACCUCCGUAAGGUGCGCCGAGGUGUGGAGAAGCCCGGCCGCUCUCUCCCCGCUGUCGCCGGUCACCGGAGUCCCGUCGCCACCGCCGACCGAAGCCGCGCCGCCAAUAGACCUCGUCGCCGGCCGUCGUCGUUCGUCGUUUGGUUCGAGGUUUGUGUACCUCGGCUGAUUCCUGGACGAGGAUUUUAUGCACAAAUAAGUUCGGAAAUUACUAGUGAAUUUCCGGGCGUGACAUUGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
56.71%
ME_num:
MEP:
40.24%
HE_num:
HEP:
2.85%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.88
Avg Expression:
2.68
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -4.56102063871305 | 0.0308700639180674 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.34894768917379 | 0.046107171621424 |
| 3 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -2.63180401178762 | 0.0197104492470145 |
| 4 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -1.68469881104147 | 0.00561491941988732 |