RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN2656

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr12

Start:

26804739

End:

26828226

Strand:

+

Ref_name:

OSA-LNCN2656

Sequence
(OSA-LNCN2656.1):

CCCCAGAGAUUUUUCUAGAAAUGACUUACCAUAGGCCACGAAGCAGCGGUUGUUUCGGCGAAACGUCGAAUAUCUAAGGGUCCACAACUGAUUUUCAUUGAGGUGGUUAGUAUAGGAAUGGCAAAUAGGACGUUAGGGUGGAUAGCUUAGACGAUGUCGGUGUCAUGCGCGUCGACUAACCGCGCCAUUAAGGUAGGAUGGAGGGCGCGACACGGUGGAAUGCAGAUGGAGAAUUCUGUGCGAAAUUAAAAUGCUGAUAACUUUGCCUUCCGGUCAUGGAAUCGAGCUAGGUUUUUUUUGACGGCUGCAGAACCACGGUCCUCACCCUAGAGAGACUGGAUUUUGAGAGGUGGACCCCCAGAGGUUUUUCUAGAAAUGACUUACCAUAGGCCACGAAGCAGCGGUUGUUUCGGCGAAACGUCGAAUAUCUGAGGGUCCACAACAUAUUUUCAAUGUGGUGGUUAGUAUAGGAAUGGCACAUAGGACAUUAGGGUGGAUAGCUUAGACGAUGUUGGUGUCAUGCGCGUCGACUAACCGCGCCAUUAAGGUAUUAUGGAGGGCGCGACACCGUGUAAUGCAGAUGGAGAAUUCUGUGUGAAAUUCAAAUCAUGAUAAAUUUGCCUUCCGGUCAUGGAAUCGAGCUAGGUUUUUUUUGCCGGCUGCAGAAUCACGGGCCUCACCCUAGAGAGACUGGAUUUGGAGAGGUGGACUCCCAGAGAUUUUUCUAGAAAUGACUUACCAUAGGCCACAAAGCAGCGGUUGUUUCGGCGAAACGUCGAAUAUCUGAGGGUCGACAACAGAUUUUCAAUGAGGUGGUUAGUAUAGGAAUGGCACAUAGGACGUUAGGGUGGGUAGCUUAGACGAUGUCGGUGUCAAGCGCAUCGACUAACCGCGCCGUUAAG

Sequence
(OSA-LNCN2656.2):

CCUAAUCAAUUAUUCUCUAUUCGCGAUCAACACACUCCGAAAUCAAAAUCCAAUGGAAUAGGCAAAUAAAAUCGGCAUGAUGCAAUUUAUUUAAAAAGUUUUUGAAGGCCCAUAAUUUUGGAGUUUUGAUUUUCGUUGGUCGAAUUUUCAGGAUGUUACAUGGUUAGUAUAGGAAUGGCACAUAGGACGUUAGGGUGGAUGGCUUAGACGAUGUCGGUGUCAAGCGCGUUGACAAACCGCACCAUUAAGGUAGGCUGGCGGGCGCGACACCGUGGAAUGCAGAUGGAGAAUUCUGUGCGAAAUUAAAACAUUGAUAACUUUGCCUUCCGGUCAUGGAAUCGAGCUAGGUUUUUUUUACGGCAGUAGAAUCACGGGCCUCACCCUAGAGAGACUGGAUUUGUAGAGGUGGACCCAAGAGAUUUUUCUAGAAAUGACUUACCAGAGGCCACGAAGCAGCGGUUGUUCCGGCAAAACGUCGAAUAUCUGAGGGUCCACAACUGGUUUUCAAUGAGGUGGUUAGUAUAGGAAUGGCAGAUAGGACGUUAGGGUGGAUAGCUUGGACGAUGUCGGUGUCAAGCGCGUCCACUAACCGCGCCAUUAAGGUAGGCGGGCGGGCGCGACACAGUGGAAUGCAGAUGGAGAAUUCUGUGCGAAAUUAAAACCUUGAUAACUUUGCCUUCCGGUCAUGGAAUCGAGCUAAUAAUUUUUUACGGCUGCAGAAUCACGGGUCUCACCCUAGAGAGACUCGAUUUGGCGAGGUGGACCCCAAGAGAUUUUUGUAGAAAUGACUUACCAUAGGCCACGAAGCAGCGGUUGUUUCGGCGAAACGUCAAAUAUCUGAGGGUCCACAACAGGUUUUCAACGAGGUGGUUAGUAUAGGAAUGGCACAUAGGACGUUAGGGUGGAUAGCUUAGACGAUGUCAGUGUCAAGCGCGUCGACUAACCGCGCCAUUAAGGUAGGCUGGCGGGCGCGACACAGUGGAAUGCAGAUGGAGAAUUCUGUGCGAAAUUAAAACCUUGAUAACUUUGCCUUCCGGUCAUGGAAUCGAGCUAAUAAUUUUUUACGGCUGCAGAAUCACGGGUCUCACCCUAGAGAGACUCGAUUUGGCGAGGUGGACCCCAAGAGAUUUUUGUAGAAAUGACUUACCAUAGGCCACGAAGCAGCGGUUGUUUCGGCGAAACGUCAAAUAUCUGAGGGUCCACAACAGGUUUUCAACGAGGUGGUUAGUAUAGGAAUGGCACAUAGGACGUUAGGGUGGAUAGCUUAGACGAUGUCAGUGUCAAGCGCGUCGACUAACCGCGCCAUUAAGGUAGGCUGGCGGGCGCGACACUGAGGAAUGCAGAUGGAGAAUUCUCUGCGAAAUUAAAACCUUGAUAACUUUGCCUUCAGGUCAUGGAAUCGAGCUAGGUUUUUUUUGACGGCUGCGGAAUCACGGGCCUCACCCUAGAGAGACUGUAUUUGGAGAGGUGGACCCUCAUAGAUUUUUCUAGAAAUGACUCACCAUAGGCCACGAAGCAGCGGUUGUUUCGGCGAAACGUCGAAUAUUUGAGGGUCCACAACUGGUUUCAACGAGGUGGUUAGUAUAGGAAUGGCACAUAGGACAUUAGGGUGGAUAGUUUAGACGAUGUCGGUGUCAAGCGCGUCGACUAACCGCGCCGUUAAGGUAGGCUGGCGGGAGUGACACCGUGGAAUGCAGAUGGAAAAUUCUGUGCGAAAUUAAAACCUUGAUAACUUUGCCUUCCGGUCAUGGAAUCGAGCUAGGUUAUUUUUGACGGUUGCAGAAUCACGGGCCUCACCCUAGAGAGACUGUAUUUGGAGAGGUGGACCUCCAAAGAUUUUUCUAGAAAUGACUUACCAUAGGCCACGAAGCAGCGGUUGUUUCGGCGAAACGUCGAAUAUCUGAGGGUCCACAACUGGUUUUCAACGAGGUGGUUAGUAUAGGAAUGGCACAUAGGACGUUAGGGUGGAUAGUUUAGAUGAUGUCGGUGUCAGGCGCGUCGACUAACCGCGCCGUUAAGGUAGGCUGGCGGGUGCGACACCGUGUAAUGUAGAUGGAGAAUUCUGUGCGAAAUUAAAACUUAGAUAACGUUGCCUUCCGGUCAUGGAAUUGAGCUAGGUUUUUUUGAUGGCUGCAGAAUCACGGGACUCCCACUAGAGAUACUACAUUUGGAGAGGUGGACCUCCAAAGAUUUUUCUAGAAAUGACUUACCAUAGGCCACGAAGCAGCGGUUGUUUCGGCGAAACGUCGAAUAUCUGAGGGUCCACAACUGGUUUUCAACGAGGUGGUUAGUAUAGGAAUGGCACAUAUGACGUUAGGGUGGAUAGUUUAGACGAUAUUGGUGUCAAGGGCGUCGACUAACCGCGCCGUUAAGGUAGGCUGGCGGGCGCGACACUAUGGAAUGUAGAUGGAGAAUUCUGUGCGAAAUUAAAACCUUGAUAACUUUGCCUUCAGGUCAUGGAAUCGAGCUUGGUUUUUUUUGAUGGCUGCAGAAUCACGGGCCUCACCCUAGAGAGACUACAUUUGGAGAGGUGGACCUCCAAAGAUUUUUCUAGAAAUGACUUACCAUAGGCAUCGAAGCAGCGGUUGUUUCGACGAAAUGUCGAAUAUCUGAGGGUCCACAACUGGUUUUCAACGAGGUUGUUAGUAUAGGAAUGGCACAUAGGACGUUAGGGUGGAUAGCUUAGACGAUGUCAGUGUCAAGCGCGUCGACUAACCGCGCCGUUAAGGUAGACUGGCGGGCGCGACACUGUGGAAUGCAGAUGGAGAAUUCUCUGCGAAAUUAAAACCAUGAUAACUUUGCCUUCAGGUCAUGGAAUCGAGCUAGGUUUUUUUUGACGGCUGCGAAAUCACGGGCCUCACCCUAGAGAGACUGUAUUUGGAGAGGUGGACCCCAGAGAUUUUUCUAGAAAUGACUUACCAUAGGCCACGAAGCCGCGGUUGUUUCGGCGAAACGUCGAAUAUCUGAGGGUCCACA

Sequence
(OSA-LNCN2656.3):

GCAAAUAAAAUCGGCAUGAUGCAAUUUAUUUAAAAAGUUUUUGAAGGCCCAUAAUUUUGGAGUUUUGAUUUUCGUUGGUCGAAUUUUCAGGAUGUUACAUGGUUAGUAUAGGAAUGGCACAUAGGACGUUAGGGUGGAUGGCUUAGACGAUGUCGGUGUCAAGCGCGUUGACAAACCGCACCAUUAAGGUAGGCUGGCGGGCGCGACACCGUGGAAUGCAGAUGGAGAAUUCUGUGCGAAAUUAAAACAUUGAUAACUUUGCCUUCCGGUCAUGGAAUCGAGCUAGGUUUUUUUUACGGCAGUAGAAUCACGGGCCUCACCCUAGAGAGACUGGAUUUGUAGAGGUGGACCCAAGAGAUUUUUCUAGAAAUGACUUACCAGAGGCCACGAAGCAGCGGUUGUUCCGGCAAAACGUCGAAUAUCUGAGGGUCCACAACUGGUUUUCAAUGAGGUGGUUAGUAUAGGAAUGGCAGAUAGGACGUUAGGGUGGAUAGCUUGGACGAUGUCGGUGUCAAGCGCGUCCACUAACCGCGCCAUUAAGGUAGGCGGGCGGGCGCGACACAGUGGAAUGCAGAUGGAGAAUUCUGUGCGAAAUUAAAACCUUGAUAACUUUGCCUUCCGGUCAUGGAAUCGAGCUAAUAAUUUUUUACGGCUGCAGAAUCACGGGUCUCACCCUAGAGAGACUCGAUUUGGCGAGGUGGACCCCAAGAGAUUUUUGUAGAAAUGACUUACCAUAGGCCACGAAGCAGCGGUUGUUUCGGCGAAACGUCAAAUAUCUGAGGGUCCACAACAGGUUUUCAACGAGGUGGUUAGUAUAGGAAUGGCACAUAGGACAUUAGGGUGGAUAGUUUAGAUGAUGUCGGUGUCAAGCGCGUCGACUAACCGCACCGUUGGGUAGGCUGGCGGGCGUGACACUGUGGAAUGCAGAUGGAGAAUUCUGGGCGAAAUUAAAACCUUGAUAACUUUGCCUUCCGGUCUUGGAAUCGAGCUAGGUUUUUUUUACGGCUGCAGAAUCACGGGCCUCACCCUAGAGAGACUAGAUUUGGAGAGGUGGACCCCCAGAGAUUUUUCUAGAAAUGACUUACUAUAGGCCACGAAGCAGCGGUUGUUUCGGCGAAACGUCGAAUAUCUGAGGGUCCACAACUAAUUUUCAACGAGGUGGUUAGUAUAGGAAUUGCACAUAGGACGUUAGGGUGGAUAGUUUAGAUGAUGUCGGUGUCAAGCGCGUCGACUAACCGCGCCGUUAAGGUAGGCUGGCGGGCGCGACACUGUGGACUGCAGAUGGAGAAUUCUGGGCGAAAUUAAAACCUUGAUAACAUGUUGUUAAUUAGUUUGAUUUUGGAUAUUACUCUGUAUAUCAUUAAUCCUAAUCUGUUGGUGGCUUUGCUUGCAUGAUUGCGCCGGCCGACGAGGUCCGAUGAUAAUGACUGCCGUUGCGUCGCCUUGCCGAUUGUACGCACGUGGCACGGACGUCCGGGGUUUUCGCCGCAUUUGCGAGGCUGACGCAGCCCGACUACGCCUAAGGCACGCUCAGGGCACGUGGCAUCUACGUCUUCAUCGCCGGCUUGCCUUCGUCGUCACCAACAGGUGUUUCCGCCCACACGGUUGGUUGGUCACACCACCGUAGAUGGGCGUCUACCGGCCGGCCGCCUCAUCUGCCGCCAACUGGUGUCCUCGCCAUCACGGUUGGAUGGUCACACAACCAUUAUCGGGCAUCAUCGUCAUCACCGACCAGCCACCUGACCACUGUCGACUGGUGUCUCCGCCUACACGGCUGGCCUAUUAUGCCGCCGUUGUUGGGUGCCUACAACUUCACCGACUGGCUCGCCUUCGCCGCUGCUGACUAUUGUCUUCGCCUACACAGCUGGGCUAUUAUACCGCCGUUGUUGGGCGUCUACGUAUUCACCGACCGGCCUGCCUUCAUCGCCGUCGACUAGUGUUUUCGCCUAUACGGUUGGUUGGUCACACCAUUGUUAUUGGGCAUCUACGUCUUCACUGACCGGCUUGCCUCCGCCGCCGCCGACGCCUGCACGGUUGGCCUAUUAUGCCGCCGUUGUUGGGCGUCUACGUCUUCACCGCCGGCUUGCCUUCGCCGCCGCCGACUGGUGUCUCUGCCUGCACGGCUGGCCUAUUAUGCCGCCGUUGUGGGGCAUCUACGUCUUCACCGCUGGCUUGCCUUCGCCGCCGCCGACUGGUGUCUCCACCUGCACGGCUGGCCUAUUAUGCCGCCGUUGUUGGGCGUCUAUGUCUUCACCGACCGGCUUGCCUUUGCCGCUGCCGACUGGUGUCUCUGCCUACACGGCUGGCCUAUUAUGCCGACGUUGGUGGGCAUCUUCUCUUUCACCGUCGACCGCCUUCGUCGCCGCCGACUGGUGUCUUCAUUGUUAUUGAUGGACGACUUUGUUCCCACAUUGGCCACCUCUGCCAUCACCAAGGGGAAUAUUACAAAGCUAAGUCAUCACUAAUUUUUUUUAUAUGAUAUUUUCCUUUUUCUCUGCCUCACUACGUCAACUGGUUCGCCGUUGCCUAGUGAGUCGGGGGCUACAGAUGUUAUAUCAUAUUUUUUAAACAUUUUUCAUAAUUUUAACUUGAUUGCUUGCGACAUAAUCUGAGUACAAAAGUGCCUAUCGAGUUAUGGAGUUCUAUCUUCCUAUGCUUCCCGUUUGGUUUAUCAAUGGAUAGUUUCCUUUGGGUCGAUUCCUAGCACCCGGGGGCUCGUUGGAUGGACCGAGUAACGCAAGGUGCUAAGUAUUAUUCGAAAUAAAUCAAAAGCAUAGAGAUAAGAUAAAUUUAUUUUCUUCUCUUUACAAUUGCAAAAGUAUCCGAGUAGUAAAUUAUGAUUCGUGAAACUUUGUUCCAUUAAUGUCGAACUCAUGUCACUCAUAUGCAUGUUUGGGAAGUCCCUAGGCCGACUCCCGAUGCUUGGGGGCUAUGACUAGUUGGACUGAGUGUUUAAACGUACGGAGUCAUUUGCUCGGGGAAAUCAAAAUUGACAAAAGGAGAAAUACAUAUUUACAAACAUUUUAAAAUACUUAAAUUUUUCUGAAGUACUGUAUUUACAUCAGAUACUACUCAUCCUAUAUGUUUGUUCUGCAG

Sequence
(OSA-LNCN2656.4):

GUGCCGUUAAGUUAGGCUGGCGGGCGCGACACCAUGGAAUGCAGAUAGAGAAUUCUGUGCGAAAUUAAAACCUUGAUAACUUUGCCUUCCGGUCAUGGAAUCGGGCUAGGUUAUUUUUGAUGGCUGCAGAAUCACGGGCCUCACCCUAGAGAUACUAAAUUUGGAGAGGUGGACCUCCAAAGAUUUUUCUAGAAAUGACUUACCAUAGGCCACGAAGCAGCGGUUGUUUCGGCGAAACGUCGAAUAUCUGAGGGUCCACAACUGGUUUUCAACGAGGUGGUUAGUAUAGGAAUGGCACAUAUGACGUUAGGGUGGAUAGUUUAGACGAUAUUGGUGUCAAGGGCGUCGACUAACCGCGCCGUUAAGGUAGGCUGGCGGGCGCGACACUAUGGAAUGUAGAUGGAGAAUUCUGUGCGAAAUUAAAACCUUGAUAACUUUGCCUUCAGGUCAUGGAAUCGAGCUUGGUUUUUUUUGAUGGCUGCAGAAUCACGGGCCUCACCCUAGAGAGACUACAUUUGGAGAGGUGGACCUCCAAAGAUUUUUCUAGAAAUGACUUACCAUAGGCAUCGAAGCAGCGGUUGUUUCGACGAAAUGUCGAAUAUCUGAGGGUCCACAACUGGUUUUCAACGAGGUUGUUAGUAUAGGAAUGGCACAUAGGACGUUAGGGUGGAUAGCUUAGACGAUGUCAGUGUCAAGCGCGUCGACUAACCGCGCCGUUAAGGUAGACUGGCGGGCGCGACACUGUGGAAUGCAGAUGGAGAAUUCUCUGCGAAAUUAAAACCAUGAUAACUUUGCCUUCAGGUCAUGGAAUCGAGCUAGGUUUUUUUUGACGGCUGCGAAAUCACGGGCCUCACCCUAGAGAGACUGUAUUUGGAGAGGUGGACCCCAGAGAUUUUUCUAGAAAUGACUUACCAUAGGCCACGAAGCCGCGGUUGUUUCGGCGAAACGUCGAAUAUCUGAGGGUCCACA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

397

LEP:

80.69%

ME_num:

83

MEP:

16.87%

HE_num:

11

HEP:

2.24%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.99

Avg Expression:

5.23

Tip: OSA-LNCN2656 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN-3.759194605592950.0453064838368103
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-3.386725174991550.0332516262212593
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-3.529447966664590.0280364327725601