Chr:
Chr12
Start:
26794054
End:
26794649
Strand:
-
Ref_name:
OSA-LNCN2655
Sequence
(OSA-LNCN2655.1):
UUUGCUGAAAUCUGGGGGUUAAAUUCUUCAACCAAAGCAAUCUGAUGAUGAAUUCUGCUGCCCACUACCUGAUUAUAACACAUACCUUACAUAUCUAGGGCGAUGCUAUUUGUAUGAGCCUGAUUUGAGCAGGAUUGUCCACCCACCAUCUGGAAAUCAUCAGGGUGCUGAUUGCGCCAAAAUUGAAGGCCUAUUGGGGACUACUACAUGUGUGAACCUCCAAGAACACUUCAUCGUCGUCCUGUCGUUGACACCUUCAUGCGACUUUAAUUUAGGGUUGCUAGCUGAAAAAAAUGUGCCGUAGAUUGCUUUUAUAUUAGGCCCCUGUUGUUCUAGCCAGUUGAUGUCUUUGCCCAAUCGAUUUCUGUAAUUGCUCUCUGAUAUUUCCAUCCUAAUAAUUACUACCUCAUUUUUGGAUAAAAGUUUGAUAUUUUUUAUGUAACAGUGAAUAUAUUCCCAUAUAUUAUGAAGUAUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
93.29%
ME_num:
MEP:
5.69%
HE_num:
HEP:
0.81%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
endosprem
Tau :
0.95
Avg Expression:
1.83
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.31797352980975 | 0.019846957527172 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -6.58863021626056 | 4.41511192048304e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -5.57388905221849 | 0.000460040815654169 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.82873407838145 | 0.000105156541042974 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -5.99601418762817 | 6.44324597309617e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.85333325828458 | 0.000215261883703593 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -6.4028124744111 | 6.63986643153949e-06 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.44810417096011 | 5.79169207033955e-05 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -6.29076289927711 | 1.98152025079113e-05 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -7.02358482069935 | 4.23706521870192e-07 |