Chr:
Chr12
Start:
26482905
End:
26485053
Strand:
-
Ref_name:
OSA-LNCN2646
Sequence
(OSA-LNCN2646.1):
AAAACAAAUCUAACAUUAAUAUGUUUAUACUCGCUUCAUCAUGCCACUGGGCAGUAACUAUUAGCUACAAAUUUGUUCAGAUUUAAAUCUGAACAAGUUACUAUGUAUCCAUUCAUAUCAAAAUAUUGUAAUCUAUAGUACUGAAUAAUAGACAAUACGUUGCUACAUUUUAGAAAGGAUUGAGUACAUUUUAGGAUGGAGGGCGCUGUUAUCUAAUUUAUUUAAGUAUUUAGAUAUAUGGAGUAAAUUAAAAAGUGUAAAACACAGGUAUGCGUCCAUAUGCAUAGCUCCAUAAAUUAAUUGGUCAUAUUUGCAUGGAUAUUCAUAUCUAUGCAUGCAUGCGUGCAGUAAAACAUGCAAAGUUGUUCUUGUAGAUAGAUGCCUAGCUAUAUGAGCUACAGUAGUUAGAUUAACUUGUUGUUUUGCUAGCUACUAGCAACAUAGCAUGAGUAAUGAGAAUCACUGUAGACAUGACUUGUGCAUGCUUGGCAGCAUCGAUCGGCAUAUCUACAGUAGCCUUUUUUCUGCUAGCUAGCAACACAUCAUCAACAACAACAACAAAAGCUACUAUUUGCUAUAGGAGCUUGGCGUGCAAUGACAUGUCACAAUCGAUCACACAAGUACAUACGUAUUAAUCUGUCCUAGCUAAUUAGCUUAGCUUGUUGGUGGUUAACUGAUACGAUGGUUAAUUACAGUCUCUUACAGAAAUUAUAGUACUAUAAUUUGUGUGGUGUGUGGUUAUGUAUAUAUGCAGAUAAUGGAUAGCAGAGACAACUCAGACAACAAGUGUAGGCACAUCACCUACUAUAUAUUCAUUGGGUGAAAUAUUUAUGAUUAAUAAUUAAUUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
65.85%
ME_num:
MEP:
22.76%
HE_num:
HEP:
11.18%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.91
Avg Expression:
12.79
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.70527860703738 | 4.47921273771584e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.91302974753467 | 7.60958321989841e-08 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 4.22295276003364 | 2.65403043336909e-19 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.67747372420503 | 1.0527103922775e-20 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.89539622813998 | 1.78667305676917e-14 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 5.58588423669169 | 1.84327230125326e-36 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.46694625783669 | 2.37132668633511e-12 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 5.91589062229517 | 4.03936962053129e-45 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.22563758980602 | 1.33414864183003e-10 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.16413780103787 | 5.9922126951614e-09 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.65059160858711 | 1.98562933573971e-14 |