RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN2643

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr12

Start:

26203848

End:

26205293

Strand:

-

Ref_name:

OSA-LNCN2643

Sequence
(OSA-LNCN2643.1):

AGCCUCUCCAAGUGACUCUCUAAGCUAAAUUUUAAUCAUUCCAACCAAAAAAUGUGCUCCAACAGCCUCUCCAACUAGAUGGUUAAGCCAUCCGGUUGGCCGAAACCCUCCCUCUUCUAGCCAAAUUUGGUCAGCCAAAAAUCACUGGCCAACCGUAGGCCCCACCUACAUCCCUCCUCCCAUCUCCUCUCUUGCAUCGGCUAGCUCGCUGCUGGCCCAGCAUCGACGACGACACGAAGGAGAGAGGCGCCGGAGCUGCCUCCCUCCGUUUGCAUACCCCCCAUUGCCGCCGUCCUCUGUCCAGCCGCGACCACCGCCGUCUCCAGCCGUGCGCGAUCGCCACCGUCGUCCGCAUCGUCGAUAGCUGCCGGAUUCAGCCAGCCGCGCGACCUCCACCGCCUCCACGUGAUCUCCGCCCCCACUCGGUGAGGAUGGCCUACCCACCGACGGCGGCACAGACGAUGCCGACCGCCGCUCUGCCCUCCCCUCCCUUUCCCUGCAGCGGCUCCUCCUCCUUGGUCUGCCCGCCCAGCGCCGACGGCUUCUUCUCCUAGUGCGGCGAGGGAGGGAGGGAGCGGCGGCAGGGUGGCUCGAUGCCUUCGCCACCGCCUCCACAACAUCGCCGCCGCUGACCCCACUGGCAUGAGCAAUAGCAACGUCGCCGCCGGUUUGACCCUUUGCCGUUGAUGCCGUCCGCGUCUCCGCCACCAACCUCGCCUCGCCGCGUCACUCCGUCCGCCUUCGGCCUCGUCGCCCGUAGCAGCCUCCUUCGGCAAGAGAGAGGAUUGGAGAGAAGGGGAGGAAGAAGAAAAGGAAGAGAAUGGCAGGUGGGGUCCAUUGGAAUGUGGAGAGUCUGUUGGAAUAGAAGAAGGUAGGCUGGUCAAACAGGUAUUUGGAGAGUCAAAAAUAGCCACUUUGUAAGAGAUGCUCUAAUGCUCCAUGACAAAGGGGAGAAAAGCGAUAGCGUGCAGAUCAAAACCGAAAAGGAAACUGCGUGUAUAAAUGUUCAGAGGAUGAUGCCAUGGAGAUCACUCACCAGAGGGAAGCUGCUCCCUACAUCUUCCUGUAGGCCUGUGA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

151

LEP:

30.69%

ME_num:

322

MEP:

65.45%

HE_num:

18

HEP:

3.66%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

pistil

Tau :

0.77

Avg Expression:

4.65

Tip: OSA-LNCN2643 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 12_days_after_shift-1.339006897883480.000935813335631949
2Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated1.369396159190860.023497228924353
39311 // leaf // control--/--9311 // leaf // salt1.414052318300430.000992972531976265