Chr:
Chr12
Start:
26072638
End:
26098238
Strand:
+
Ref_name:
OSA-LNCN2641
Sequence
(OSA-LNCN2641.1):
UUUUUGAAGUUUAAACGCAACAAAAAAACCUCAAAAAAAUAUUUUGGAUUUUACUAGCCAUCCUAUACAUGGUUACACAUCACUAACUACAAAUUCACAAUUUUUCACGCAAUAUAACUUGCAUGCUACACGUGAGAUUCAAACUCAAGACCUCAACCUCCAUAUAGAGCUCCCUUACCAACUCACCUACUCAACACAUAUUGACUACUCACCCAAUGUUAUUAUUUUGUCUAUGCUUGUCUGAAUCAUUUAACAUAUAUUUAACACCCUAAAUGACUUCAAAUGAAAAUAUUAUCAACUAAAUAGUUAUAGAUCUCAUCGUGUUUUAUAACUUUUACAUAGAAAAUAUCUUCAUCCGAUAUUGUUUGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
33.13%
ME_num:
MEP:
64.02%
HE_num:
HEP:
2.64%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.59
Avg Expression:
3.14
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.52155458225237 | 0.0214712399462178 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | -2.20982179370898 | 0.0103626274719247 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -2.45024006266907 | 0.00191130648204682 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.5543973517117 | 0.00944483289653082 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -3.33037267151064 | 0.000317936173348205 |
| 6 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 6.5152760624877 | 0.00466956320006583 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.4541774609794 | 0.0192455340089412 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 5.79272880670286 | 0.00460896382766306 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.11281156780651 | 0.0369931709007997 |