RiceNCexp:Browse

OSA-LNCN2635

Function Link

Tissue-specific Expression analysis

Differential Expression analysis

Co-Expression Curve

Network analysis

Basic Info

Chr:

Chr12

Start:

25870219

End:

25872513

Strand:

Ref_name:

OSA-LNCN2635

Sequence
(OSA-LNCN2635.1):

CAUCCGUACCAAGUGGACGCACGAUUCCAUCGCAAUAACACCGUGCGCUUACCUCGCCGCCGCAAGCUCCGCUCCGCCAUAAGAGCAAUGGUCUUUAUUAGCGGUCUCUCUUCAUUGUCAUGCAAGUAUAUUUGGUGACGUGGAAGAGAGAGAAAGAAGGAAAGAGAAAGAUAGUUGCUAUGGAGACGUGGAAGAGAGAGAAAGAAGGAAAUGUCUCUCUUUAUUGUCAUGUAAGUAUAUUUGGUGACGUGGAAGAGAGAGAAAGAAGGAAAGAGAAAGAUAAUUGCUAUGGUGACGUGGAAGAGAGAGAUUGAAGGAAAGAGAAAGAUAGUUGCUACGCAUGACAACGACAUAGAGUCGACUCUUAGCAUUUAUUAGGAAAUUUUUUGUUGCAUUGAGUCUAAUAAAGGAAAGAUGACUAGUAAGAAAGUAUUUUGGCACAUUAAUGGUUAGAGACUGUAUUGUCUUAACUAUUGUAACGCGAUAGUCUCUAAUUAACGUAUCGGUCUCUACCUUUGUACUUGCCGUAACGCCGCUGCCGCGACCUCCCGGAUGAUGCCUCUAGAGUGCAGCUGCGAGCAAAUCGACUCCCCGGCCACCGCUUGAACACCGGGACAUCUCCUCACAGCACCCUUGUUGACCCGUCGUCCAUAUCCUCUCUAGCGGCCUCCUCCAACAAGCCCAGGUGUGCUUGAUCUGCGUGUUAACACUCUGGGAUUUUGGUGUAUUGUUUGAUAUUGUUCAACUCAGGAACACCUACGCUUUCUCAAGCAACCAAUUAUAAUUCAGCUUUGUUACUGCUUCCAGUAUCAUUCAUUGCAAGCAGUUGUCCACCAAUAAUCCCAAAGUAGGUUGUCCUUCUCCCAUUGUGCCAUCCUCGAUUUCUGUUUCCAUCGGCCGCCCUGCGAUAUGUACCGGAGGUGUACUUGCUAUAGCAGUGUGCUGGUGUCCAGUUGAUGCACCCAAGGAGGCUCAAAUCCAAGUUGUGAUGUGGCGAUGAUGAGCAAGUCAGACAAGAACCUAUAUCAGAUGCGGUCCAACCUUACCGUGUGUAUGAACCACACACUUUUCCAUCUCUCUCCGUUUCUUCAGGAUCUGAGCAGACCGGGCGUCCACCCGAUGAUUGUGUUAUGUAUCGAGUUACUGUAGUUGCCAAUUGUUGUCAUUUCUCUUUUGUGGUCUCACUGAGU

Sequence
(OSA-LNCN2635.2):

CAUCCGUACCAAGUGGACGCACGAUUCCAUCGCAAUAACACCGUGCGCUUACCUCGCCGCCGCAAGCUCCGCUCCGCCAUAAGAGCAAUGGUCUUUAUUAGCGGUCUCUCUUCAUUGUCAUGCAAGUAUAUUUGGUGACGUGGAAGAGAGAGAAAGAAGGAAAGAGAAAGAUAGUUGCUAUGGAGACGUGGAAGAGAGAGAAAGAAGGAAAUGUCUCUCUUUAUUGUCAUGUAAGUAUAUUUGGUGACGUGGAAGAGAGAGAAAGAAGGAAAGAGAAAGAUAAUUGCUAUGGUGACGUGGAAGAGAGAGAUUGAAGGAAAGAGAAAGAUAGUUGCUACGCAUGACAACGACAUAGAGUCGACUCUUAGCAUUUAUUAGGAAAUUUUUUGUUGCAUUGAGUCUAAUAAAGGAAAGAUGACUAGUAAGAAAGUAUUUUGGCACAUUAAUGGUUAGAGACUGUAUUGUCUUAACUAUUGUAACGCGAUAGUCUCUAAUUAACGUAUCGGUCUCUACCUUUGUACUUGCCGUAACGCCGCUGCCGCGACCUCCCGGAUGAUGCCUCUAGAGUGCAGCUGCGAGCAAAUCGACUCCCCGGCCACCGCUUGAACACCGGGACAUCUCCUCACAGCACCCUUGUUGACCCGUCGUCCAUAUCCUCUCUAGCGGCCUCCUCCAACAAGCCCAGGUGUGCUUGAUCUGCGUGUUAACACUCUGGGAUUUUGGUGUAUUGUUUGAUAUUGUUCAACUCAGGAACACCUACGCUUUCUCAAGCAACCAAUUAUAAUUCAGCUUUGUUACUGCUUCCAGUAUCAUUCAUUGCAAGCAGUUGUCCACCAAUAAUCCCAAACAGUGUGCUGGUGUCCAGUUGAUGCACCCAAGGAGGCUCAAAUCCAAGUUGUGAUGUGGCGAUGAUGAGCAAGUCAGACAAGAACCUAUAUCAGG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.

NE_num:

NEP:

0.2%

LE_num:

391

LEP:

79.47%

ME_num:

MEP:

19.31%

HE_num:

HEP:

1.02%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10

Tissue :

shoot

Tau :

0.92

Avg Expression:

1.93

Tip: OSA-LNCN2635 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01

Num.	Condition	log2(FoldChange)	Padj
1	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN	-2.83323949613702	0.0003559352941577
2	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN	-2.25510544526757	0.0013770140309243
3	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN	-3.59585446042078	7.55036276179897e-06
4	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA	-3.49008957684943	0.00147228191955696
5	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN	-3.67278229745507	0.000495027940050156
6	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA	-4.84710995421188	0.000134930919557781
7	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA	-1.68967212284369	0.0162303934642571
8	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN	-2.67105443119138	0.000543242136247019
9	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA	-2.81156301835744	3.54868310456736e-05
10	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA	-4.62307335118829	3.69142812643157e-05
11	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA	-6.11977168555683	5.97878479737016e-06
12	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN	-3.2639839268683	1.48116670801869e-05
13	Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA	-3.3193887311435	6.3594756664064e-05
14	Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA	-5.28685371727996	4.87064239962127e-07