RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN2632

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr12

Start:

25844958

End:

25854879

Strand:

-

Ref_name:

OSA-LNCN2632

Sequence
(OSA-LNCN2632.1):

AUUUCACUGCCUUGUUGGAGUACAAAAAAUUUUCACUCCUCGUAUUUUUCACUCGUAUUUCACUGCUGAUUCCAUUCGGAGUAAAAAAAAUCACUGCCUAGAUUAGGUCUCAGUGAGAAAAAUACCAUGUCUUAUCUCAUGUAGUCUCAUCGAACUGUAGUAAAAAAAUUACUCAUCAGCUAGGUUAUUUACUAAUUAAGAUGCCCAAUAAGGAAGGGUAGUAAAAAAAUUUCUUUUAAUAUAAUUACAUAGAUAGUAAUUUUUUACUGCACAUGUUUUUACGUACCUUUCCCACCUCUACCGUCACAAGUAAAAAAAUUACUGAUUCAUCUCUAAAUUUUAAUUUUCCUUUCUUGCCCACCUCGUAUCAACACUGAGUAAAGAAAUUCAUCUACCCUAAUUUGUACGUGGAGUAAAAAAAUCACUUCGUCGUCUCUACUUUAAUUUGCUUGCACAAAUCAUCCUAUUAGACAGCAAGUAAAAUAUUGAUCAUUUUGGAUCCGUUAAUAGUAAUAUUUUUACUCCUAUAAUUUUUAUCACUUUUCGGUAUGUUGAUAUUAAUAUUUUUACUCACGUCUAUUUAAGGUGCACAAAAAUCACACCCAAUCAGGAUUAUUCAAUCGUGAUCAUACUAUCCACAUUAAAAAAAAUUACAGAUCGAAAGAGGAAGAAAAACAGAAAUGCAUCUCCGCUUUCUCCUGUUAUAUAUGAUCCAGUUUUUCCGUUCCUCCGUUCCUAUCCAAAUUCCACCUUUUCCGUUAUUUCCAUUUUUUCGCUUUCUCCUUUUCCGUUCCUAUCCAUGUAGUAAUUCCCAUUCCUAACCACGUAAGUAAUUUUCUUAAGAAAAAUCUUUGAAGUAUUUUUUUUACUGAUAGUAUUUCCAAAAGGUCAUAAUAUGAUAUUAUCAUAUGAACACUACGUCGUCUCUGUCUCUGUGGAAAAACUACAAUAUCAUCAAUCCUUUAGUAACAAUUCUUCCCACGCGCCGUCGACGGAGCCGCUGGGAGAUGAGGAUAGGGCCGGCGCGGUCGAUAGCCCCUCCGUGCCUCCUCACCGGUGGAAGGGAAGGAAUGCAGGUGAUUGGAACGCCUCCACCGUAAUCGCAGCACGCCGUUUCUCCUCGCUGAUGCCAACCAUCCCACCGCUGCUCUCCUCGUACCGUCCACAGAUUCGUAUAAAUCGGAUGGAAAGAAAAAGUUGGAUUAGAAAAUGGCCAUAGCGGCCAUAGCGGCCUCCCAGCAGCUGCGCGCACGGCCCAUCCGUCUCCGCGUCAAGCCAGAGUAAGGGCAGCAGCCGCCACGGGGUUGGCCGCCGGGUCAGCCACCAUGCUGCCUCCCUCCCAUGGCUGCUGCAGGUGAACUAGGACGCGAAGAAGAUGAGGAGAUCGUCGCCGCUUGCCGACUCCACGCCAGAUCUUGCCACCUACCACCUCAUACCCUGACGCCGACGGACGCCUCUCUGCCUCUCCAGAUCCGAAGAAAUCGGUGGAGCACUCGACUCCGGCGUAAUUCAUUGAUCUUUUCAUACCUGAAAUAUGGUUAAACGAGAAAGCAUGUCAGACCUAUGUGGACUUCUACUCUCUCUUAUUGCUCCUAGUUUCAGCAGUUCUUCUAUAUGCAUCUUAAAUUCUUCUAUAUCUUUCGGAGUUGCUUCUAUUGGGCUGGUCUUAAUAAUAUAUUCUGGGUUUAUUAUAUUAAUUUUACACUCGAUAGCAUUUUUCUCCCAAUAUUUCAUAGGAAUUUCUCCUAUAAUUUGGAUAUCCUCUAAUCUUUGAACAAUUUUUUCUAUAUCCUUUUUAGACUUAAUAUCCCUAUACCAAUUUGGUGCAAAUGCUUGUAAUCCUAUGCACUCUAUAUUGGAAUUUGAUAUAUAAUAGAUGUCUAUAUUCUCACUAAGUUCAUAUUCAUUAAUUCUUUCG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

414

LEP:

84.15%

ME_num:

76

MEP:

15.45%

HE_num:

1

HEP:

0.2%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.88

Avg Expression:

1.31

Tip: OSA-LNCN2632 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated3.609390235424650.0291816751889709
2Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day"3.386889847099240.00128441878694211
3Nipponbare // panicle // AM--/--Nipponbare // panicle // PM-3.816141672057060.0169682735939894