Chr:
Chr12
Start:
25533459
End:
25535063
Strand:
+
Ref_name:
OSA-LNCN2628
Sequence
(OSA-LNCN2628.1):
GAAAAUUUAGGAAAUAUAUCAUAAAAUAUAUGGGUACAAAUAGGAUAAAAUGUGGCAAAAAAUAAAAAAUAUGAGAAAUAUAUGGAAAAAAUUAGAAAAUCGUAGGAAAAAUAAAUGGGCCGAUGGGCCGUGCCAUGCCUGGGCCGUGCCGUGCCGGCACGCUAGAGCAAACGUGCCGUGCCGUGCCGGCCUACGGGCUGAGGCGUCGGCCCAAACACGGCACGGGAUAACGGGCCGUGCUGGCACGGCCCACAGGCUGGCGUGCCGUGCCGGCCCUGGGCCGGCUACAGUACUGCCGUGCUCGGGCCGGCCCGGCUUGGCACGGCCCAUUUGGCCAGGUAUAGGAUAAGGCGAGCGGCAGCGGGCGGAGUGUGGACCAGAGGGGCGGCGGGUGGAAGCGGCGGGGCAGCAGGCGGUGGGCGGAGCGACGACGGGCGGCGAGAGGCGGGCGGCGUAGCGAGAGCGCUGCGUGGGAGGAGCUCUGGAGUGGCUGACGAGCAGCCCAACCACCAUGCGUUCCAACGCCAGCCAUCAAUCCUCGUCGCGCGCGGAUCGAAUUACCAUGUAAGCGCCACGUCAGUGCCACGUCAUAUGAAGACCGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
54.67%
ME_num:
MEP:
43.9%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.85
Avg Expression:
2.71
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.45320203932652 | 3.14586801493923e-09 |
| 2 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.33938980108621 | 0.000169149045372278 |