Chr:
Chr12
Start:
25339521
End:
25341166
Strand:
+
Ref_name:
OSA-LNCN2626
Sequence
(OSA-LNCN2626.1):
UUCUUAGAUGAUUAAUCAUUUGACAUCAGCCUAAAAUCAACCUAAAACCGACAAACUGAUAGGAACCAAGUACCAUUGCUAACAUUAGUAUUCAAACAUAAGGCCAAGCAGAAAUUUCUAGAUACUAUUCAGAGGUCACUAAAGAGUAGAGACAUAGUAUUAGGCAGGAAAAGACCAAUUUCUCAUUGUCUGUAGAAAAAUCUUAAGGCAGCCAAGGAGACAAAACAUAUCUCUGCCUAAACAGGUCCAAAAGAAACAGAUCAAGGUCCAGGGCAAACUGAAUCACAGUUCUCAGUUCUCACUAUAAUCCGAUGAUACUCACGUUUCCUUUUGGAACCUGACUUAGCUUUCAUUGAAUCUUUGCCCUUCAGGAACUGAUUCUAAAUCUAUCCCAAAUUCCCAAUAUAAUGCACACAUCCAAUCAAUUCCUCCCAAUUUCUUGAUUCAAAGCAAAUAGAGAAUCUUGCAUACCUGCAGCAUCGACACAUGUUGAGGUCCAUCGUUGGCGGCGGCGCGGCGAGAGUGAUGGUGGGUGAGGCGCUGAAAGUUGGAGCAUCCGCCCAUAUGAUCCAUCCCCUUCUUCUAUGGCCGGUUGGGAGGUCUGCUGGUGGCAGCUGCGCGGCGAUCUUGGGGGUGCGCAUGGCGCUGCAGGGAGGAGAAAUGGAGCAUCCAAGCGGCGAUCUUGAGGGUGCGCAUCUCGCUCUUCCAUGGUAGACGGCAACGGCAGAGGGGCAGAGCUCCACAGCGCGAUGCGGCGGCGGCGGAGUGUGAGGAGCGAUGCGGCAGCGCAGCUGGUCCUGCCUGCCUGGUACUCGACCUGAAACCUAGCUAAUGGGUCGGCCCAUAAUGCUCCAUGGGUCACUGUGGGUCGACCCAUGAUGACCCAUGAAAUUUCAUGGGUAAGCCCAUGAGGUUUUGACCCCAUGUUUCAUGGGCUGGGUCGCUGGGUAGUUGGGUUAACCCGGCCCACGUGCAUCCCUACCCGCCAGGUACCACUUCUGCCCCUGAUUUGGUACUUCGCGAUAAAUAGAGGUGGAGGGGCAAGAAUGUAAUUUCGCGUGCGGAUGGAUAAGAGAGUUACGGGCGGAAGGAUAGGCGUGCGUCGUCUCGUUCGUCCCAGCUGCCGUGCCUCGUCUCCUCCGCAUGUCCUCUGCUGCCGGCACCUACUCCGCCGUCGCUGCCGCCUCCUCCUCCGAUCCUUUGCGGGCGCCUACUCCACCGUCGCCGCCUCCUCCUCCUCCUGCUCCGUCACCUCGCCGCCCCUACUGCCACCUCCUCCUCCGCUAGCAACGCUUUGCCGCCGCCGCGGCUACCGCCUCCUUCACCGGCGCCUGGUCCGCCGUCGUGGCGUCGCCCCCACCACCCCGCCGCCGCCUCCUCCUCUGCCGCCACCUACUCUGCUAUUUUUUUCUCCCGAUCUUACCCGGAAUUAAACGGUUUUGAUUUGUUUUGGUACCUAUAGGUACUAGUAUCGGGAGGUACAAAAUGCUGGACGCAAAAAUUCUCAAGUAAUAAAGAUAUAAUAUACUAACUAAUAAGAACUUGAAAUUUACAAAAUCAUCUACCUAUUAUACUAUAGAGUAGCAGUGUCUUAUAUACAUGCAUAUAUUUAGUCACAGCGUCACCUUCCCCGAUCAUGGUCAAAG
Sequence
(OSA-LNCN2626.2):
CGACAAACUGAUAGGAACCAAGUACCAUUGCUAACAUUAGUAUUCAAACAUAAGGCCAAGCAGAAAUUUCUAGAUACUAUUCAGAGGUCACUAAAGAGUAGAGACAUAGUAUUAGGCAGGAAAAGACCAAUUUCUCAUUGUCUGUAGAAAAAUCUUAAGGCAGCCAAGGAGACAAAACAUAUCUCUGCCUAAACAGGUCCAAAAGAAACAGAUCAAGGUCCAGGGCAAACUGAAUCACAGUUCUCAGUUCUCACUAUAAUCCGAUGAUACUCACGUUUCCUUUUGGAACCUGACUUAGCUUUCAUUGAAUCUUUGCCCUUCAGGAACUGAUUCUAAAUCUAUCCCAAAUUCCCAAUAUAAUGCACACAUCCAAUCAAUUCCUCCCAAUUUCUUGAUUCAAAGCAAAUAGAGAAUCUUGCAUACCUGCAGCAUCGACACAUGUUGAGGUCCAUCGUUGGCGGCGGCGCGGCGAGAGUGAUGGUGGGUGAGGCGCUGAAAGUUGGAGCAUCCGCCCAUAUGAUCCAUCCCCUUCUUCUAUGGCCGGUUGGGAGGUCUGCUGGUGGCAGCUGCGCGGCGAUCUUGGGGGUGCGCAUGGCGCUGCAGGGAGGAGAAAUGGAGCAUCCAAGCGGCGAUCUUGAGGCGCGAUGCGGCGGCGGCGGAGUGUGAGGAGCGAUGCGGCAGCGCAGCUGGUCCUGCCUGCCUGGUACUCGACCUGAAACCUAGCUAAUGGGUCGGCCCAUAAUGCUCCAUGGGUCACUGUGGGUCGACCCAUGAUGACCCAUGAAAUUUCAUGGGUAAGCCCAUGAGGUUUUGACCCCAUGUUUCAUGGGCUGGGUCGCUGGGUAGUUGGGUUAACCCGGCCCACGUGCAUCCCUACCCGCCAGGUACCACUUCUGCCCCUGAUUUGGUACUUCGCGAUAAAUAGAGGUGGAGGGGCAAGAAUGUAAUUUCGCGUGCGGAUGGAUAAGAGAGUUACGGGCGGAAGGAUAGGCGUGCGUCGUCUCGUUCGUCCCAGCUGCCGUGCCUCGUCUCCUCCGCAUGUCCUCUGCUGCCGGCACCUACUCCGCCGUCGCUGCCGCCUCCUCCUCCGAUCCUUUGCGGGCGCCUACUCCACCGUCGCCGCCUCCUCCUCCUCCUGCUCCGUCACCUCGCCGCCCCUACUGCCACCUCCUCCUCCGCUAGCAACGCUUUGCCGCCGCCGCGGCUACCGCCUCCUUCACCGGCGCCUGGUCCGCCGUCGUGGCGUCGCCCCCACCACCCCGCCGCCGCCUCCUCCUCUGCCGCCACCUACUCUGCUAUUUUUUUCUCCCGAUCUUACCCGGAAUUAAACGGUUUUGAUUUGUUUUGGUACCUAUAGGUACUAGUAUCGGGAGGUACAAAAUGCUGGACGCAAAAAUUCUCAAGUAAUAAAGAUAUAAUAUACUAACUAAUAAGAACUUGAAAUUUACAAAAUCAUCUACCUAUUAUACUAUAGAGUAGCAGUGUCUUAUAUACAUGCAUAUAUUUAGUCACAGCGUCACCUUCCCCGAUCAUGGUCAAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
47.97%
ME_num:
MEP:
50.2%
HE_num:
HEP:
1.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_meristematic_zone
Tau :
0.71
Avg Expression:
2.24
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.45480326868408 | 0.039927865475451 |
2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.91535243693676 | 8.92632720994366e-09 |
3 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 2.06489358418034 | 8.8239886073681e-34 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.76412128895699 | 0.0108022777260793 |