OSA-LNCN2626


Function Link


Basic Info

Chr:

Chr12

Start:

25339521

End:

25341166

Strand:

+

Ref_name:

OSA-LNCN2626

Sequence
(OSA-LNCN2626.1):

UUCUUAGAUGAUUAAUCAUUUGACAUCAGCCUAAAAUCAACCUAAAACCGACAAACUGAUAGGAACCAAGUACCAUUGCUAACAUUAGUAUUCAAACAUAAGGCCAAGCAGAAAUUUCUAGAUACUAUUCAGAGGUCACUAAAGAGUAGAGACAUAGUAUUAGGCAGGAAAAGACCAAUUUCUCAUUGUCUGUAGAAAAAUCUUAAGGCAGCCAAGGAGACAAAACAUAUCUCUGCCUAAACAGGUCCAAAAGAAACAGAUCAAGGUCCAGGGCAAACUGAAUCACAGUUCUCAGUUCUCACUAUAAUCCGAUGAUACUCACGUUUCCUUUUGGAACCUGACUUAGCUUUCAUUGAAUCUUUGCCCUUCAGGAACUGAUUCUAAAUCUAUCCCAAAUUCCCAAUAUAAUGCACACAUCCAAUCAAUUCCUCCCAAUUUCUUGAUUCAAAGCAAAUAGAGAAUCUUGCAUACCUGCAGCAUCGACACAUGUUGAGGUCCAUCGUUGGCGGCGGCGCGGCGAGAGUGAUGGUGGGUGAGGCGCUGAAAGUUGGAGCAUCCGCCCAUAUGAUCCAUCCCCUUCUUCUAUGGCCGGUUGGGAGGUCUGCUGGUGGCAGCUGCGCGGCGAUCUUGGGGGUGCGCAUGGCGCUGCAGGGAGGAGAAAUGGAGCAUCCAAGCGGCGAUCUUGAGGGUGCGCAUCUCGCUCUUCCAUGGUAGACGGCAACGGCAGAGGGGCAGAGCUCCACAGCGCGAUGCGGCGGCGGCGGAGUGUGAGGAGCGAUGCGGCAGCGCAGCUGGUCCUGCCUGCCUGGUACUCGACCUGAAACCUAGCUAAUGGGUCGGCCCAUAAUGCUCCAUGGGUCACUGUGGGUCGACCCAUGAUGACCCAUGAAAUUUCAUGGGUAAGCCCAUGAGGUUUUGACCCCAUGUUUCAUGGGCUGGGUCGCUGGGUAGUUGGGUUAACCCGGCCCACGUGCAUCCCUACCCGCCAGGUACCACUUCUGCCCCUGAUUUGGUACUUCGCGAUAAAUAGAGGUGGAGGGGCAAGAAUGUAAUUUCGCGUGCGGAUGGAUAAGAGAGUUACGGGCGGAAGGAUAGGCGUGCGUCGUCUCGUUCGUCCCAGCUGCCGUGCCUCGUCUCCUCCGCAUGUCCUCUGCUGCCGGCACCUACUCCGCCGUCGCUGCCGCCUCCUCCUCCGAUCCUUUGCGGGCGCCUACUCCACCGUCGCCGCCUCCUCCUCCUCCUGCUCCGUCACCUCGCCGCCCCUACUGCCACCUCCUCCUCCGCUAGCAACGCUUUGCCGCCGCCGCGGCUACCGCCUCCUUCACCGGCGCCUGGUCCGCCGUCGUGGCGUCGCCCCCACCACCCCGCCGCCGCCUCCUCCUCUGCCGCCACCUACUCUGCUAUUUUUUUCUCCCGAUCUUACCCGGAAUUAAACGGUUUUGAUUUGUUUUGGUACCUAUAGGUACUAGUAUCGGGAGGUACAAAAUGCUGGACGCAAAAAUUCUCAAGUAAUAAAGAUAUAAUAUACUAACUAAUAAGAACUUGAAAUUUACAAAAUCAUCUACCUAUUAUACUAUAGAGUAGCAGUGUCUUAUAUACAUGCAUAUAUUUAGUCACAGCGUCACCUUCCCCGAUCAUGGUCAAAG

Sequence
(OSA-LNCN2626.2):

CGACAAACUGAUAGGAACCAAGUACCAUUGCUAACAUUAGUAUUCAAACAUAAGGCCAAGCAGAAAUUUCUAGAUACUAUUCAGAGGUCACUAAAGAGUAGAGACAUAGUAUUAGGCAGGAAAAGACCAAUUUCUCAUUGUCUGUAGAAAAAUCUUAAGGCAGCCAAGGAGACAAAACAUAUCUCUGCCUAAACAGGUCCAAAAGAAACAGAUCAAGGUCCAGGGCAAACUGAAUCACAGUUCUCAGUUCUCACUAUAAUCCGAUGAUACUCACGUUUCCUUUUGGAACCUGACUUAGCUUUCAUUGAAUCUUUGCCCUUCAGGAACUGAUUCUAAAUCUAUCCCAAAUUCCCAAUAUAAUGCACACAUCCAAUCAAUUCCUCCCAAUUUCUUGAUUCAAAGCAAAUAGAGAAUCUUGCAUACCUGCAGCAUCGACACAUGUUGAGGUCCAUCGUUGGCGGCGGCGCGGCGAGAGUGAUGGUGGGUGAGGCGCUGAAAGUUGGAGCAUCCGCCCAUAUGAUCCAUCCCCUUCUUCUAUGGCCGGUUGGGAGGUCUGCUGGUGGCAGCUGCGCGGCGAUCUUGGGGGUGCGCAUGGCGCUGCAGGGAGGAGAAAUGGAGCAUCCAAGCGGCGAUCUUGAGGCGCGAUGCGGCGGCGGCGGAGUGUGAGGAGCGAUGCGGCAGCGCAGCUGGUCCUGCCUGCCUGGUACUCGACCUGAAACCUAGCUAAUGGGUCGGCCCAUAAUGCUCCAUGGGUCACUGUGGGUCGACCCAUGAUGACCCAUGAAAUUUCAUGGGUAAGCCCAUGAGGUUUUGACCCCAUGUUUCAUGGGCUGGGUCGCUGGGUAGUUGGGUUAACCCGGCCCACGUGCAUCCCUACCCGCCAGGUACCACUUCUGCCCCUGAUUUGGUACUUCGCGAUAAAUAGAGGUGGAGGGGCAAGAAUGUAAUUUCGCGUGCGGAUGGAUAAGAGAGUUACGGGCGGAAGGAUAGGCGUGCGUCGUCUCGUUCGUCCCAGCUGCCGUGCCUCGUCUCCUCCGCAUGUCCUCUGCUGCCGGCACCUACUCCGCCGUCGCUGCCGCCUCCUCCUCCGAUCCUUUGCGGGCGCCUACUCCACCGUCGCCGCCUCCUCCUCCUCCUGCUCCGUCACCUCGCCGCCCCUACUGCCACCUCCUCCUCCGCUAGCAACGCUUUGCCGCCGCCGCGGCUACCGCCUCCUUCACCGGCGCCUGGUCCGCCGUCGUGGCGUCGCCCCCACCACCCCGCCGCCGCCUCCUCCUCUGCCGCCACCUACUCUGCUAUUUUUUUCUCCCGAUCUUACCCGGAAUUAAACGGUUUUGAUUUGUUUUGGUACCUAUAGGUACUAGUAUCGGGAGGUACAAAAUGCUGGACGCAAAAAUUCUCAAGUAAUAAAGAUAUAAUAUACUAACUAAUAAGAACUUGAAAUUUACAAAAUCAUCUACCUAUUAUACUAUAGAGUAGCAGUGUCUUAUAUACAUGCAUAUAUUUAGUCACAGCGUCACCUUCCCCGAUCAUGGUCAAAG


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

236

LEP:

47.97%

ME_num:

247

MEP:

50.2%

HE_num:

8

HEP:

1.63%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

root_meristematic_zone

Tau :

0.71

Avg Expression:

2.24

Tip: OSA-LNCN2626 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN1.454803268684080.039927865475451
2Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-1.915352436936768.92632720994366e-09
3Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae2.064893584180348.8239886073681e-34
4Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA1.764121288956990.0108022777260793