RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN2603

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr12

Start:

24539840

End:

24541092

Strand:

.

Ref_name:

OSA-LNCN2603

Sequence
(OSA-LNCN2603.1):

CCGAGGACGCCACAGGAGACACCCAUCUGCCCAUUUUCAUUCAUCCCAUUCUUCUUAGUAGAUUAGGAAAAUCAGGAGAGGAGAUUGAAGUCGCCUGGUGAUAGCAAACCGGUGCCGCUGCCACUGCGGAGAAAAUUAAACACCGCAGCCGGCGUCCUUCGUCAAGUCGAGUCAUUUAUCGACAACAUGCCGCCAUUCAAGAUAUUUGCGCUGGAUGGUGAGCACAUUGAAUAAAUAUUAAUUUUCUAGAUUAAACACAAUAGAUGUUCGGUCCUUAUUGGCGAUCGGAACAUCUGCGUGUUCUUAAUCUAUCUUGAUCUUGAUGAUUAAAGCCAGAUCAAUGAGAGCCGAAACACGUUUAUCAUCAAACUCCAUUUAUACAAUCAAUGGUAUAAGGCUGGUCCGGUCCUCAUUGGCGAUCGGAUUAUCCGAAUACUAUUUGAUAUUUUCUAUGCUCAAAAUUAGAUGUCCGACCCUUAUUGGAGAUUGGAUCAUCUAUUUGUUACUAUGAUGCCAAUAACAACGGUGCUAGAUAUGUCCAACUUUCAUUGGUGAUUGAACAAUCUAAGCGGUGUUUUACAAAAUAUAUUUUGCUACCAUGCACACGCAUGGGAGCUAUUCAUGAUCUUUGGAAGAUAAAAAUUAUGGCCGAGCAUUUACGAGGCCGGAGUCACGAUAUUAUUAACAUGUCCAAACAUAUAGGAACGGAUACACGUUACUAGGUUCCAACGAGGCAAAAGUAACGAUAUAUCUAUAUCUAAUAAAGGCCGGCAUAUAUGACUGGGCACCGACGAGGCAAAAGUCAUCCCCUUUAUUAUGAUACCUGAUUCAUGUAUGGACGUGGUGAUAAUAUAUUGUGACCAGGUUUCGGCAAAACAAAGCCACCUAUAUCACAGUUAUCAUUAAAUUUCUGCACCAACCUCAACCUUCGGCGAGCAAUUAAUUUUGAAGACGACGAUCACAAAGCGCAUCUUAAUCGGAGGUGUUCCAUAGGCUCGUCCUAUGGAUAUAAUUAACCGGUAGCCUCAUUGCUAGGCGCGGGGAAUCAGCGGACUGCAUGCAAUCUCCAGUCAGCAUACAUUUCCAUUAAGUAUUCCUCGCGAAGGCAAAAGACGAACUCCUGUGGGAGCCCUGAUGUAUUUGUAAACAUUCAUAUUAAUGAAUCGUGAUUAAUAAAAUACAAGGUUUCCCUAUUUUUUGUGUGUUCGUUAUUUUGUUUUCAUCAAACAAAAUGGCACGCCCAGCGGACCUGA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

460

LEP:

93.5%

ME_num:

28

MEP:

5.69%

HE_num:

3

HEP:

0.61%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

anther

Tau :

0.99

Avg Expression:

19.37

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h-4.315894147961530.0136866861552977
2IR64 // panicle // Dawn--/--IR64 // panicle // Dusk-3.396102721477620.0376411157668002