Chr:
Chr12
Start:
24510626
End:
24512916
Strand:
-
Ref_name:
OSA-LNCN2602
Sequence
(OSA-LNCN2602.1):
ACAACAUGUGUUAUUAUCCUAUCGUCAAAUCUGAUAUACAAACUAUAUUGAUAUUUCGAGUGACUGAAUAAUCAUAUUAUCGGUAUAGGGUUUUUUUUCCUUGGCAGAAGAAUUUGCUAAGAGGCUUUGAUGAGGUCAGGGAUUUUGUUGCAGAUCAGAUGUCUUUGAGGGUAUCACAUUUCAUGCUGACCGACUGCAUGAGCAGUACAUCAAUUUUCAGCUACAGUGCCACUCUACAUAUAUACUCCCUCCGUCCCUAAAUAUAAGGGAUUUUAAUUAUUACAACAAAUCUGGACAAGCUUCCCAUCCAGAUUCGUUGUACUAGAAUGUGUCAUAUCCAACCAAAAUCCGUUAUAUUUAGGGACGGAAGGAGUAUUCUUUACUAUUGGUUAUGACACUCAUAGGCUUUUAUUUCUAUAGAAGUUGAUGAGUGUGAAAUUCUUCUGAUAUGGCAGGAAAAACUGCAAUUUGUUGGCCAUGUAGUUCUUGCUUAAGUACUUACUAAACAACUUCUGCAAAGACAUCUUUUUUUUAUGGCAGACUAGGAGACUUGUCUAUUCUCAAUCAAUUAUAUAGGUUCACAUACACUUGUACUCAAAUUCGUGGCAUUCCAAGGUUAAAGGUGCUGAUUAGUGGUCGUAUCAUGAGGUCGAGAAACAUGUAGUUAUUGCGAUGUAUAGAUACAUCAUAAAUCUGAGUAAAUCGUUAAGCAAUAUACAUUCUCCAUUAUUUAAUUAUUGCAAUUGUUAAUUAUGCUUAAAAACAUAAUGUUAAUCAUGCUCAACCGUAAUGCUGGCAACUAAAAAUAUUACCUAGAUUGACAGUAGUACAGUUGAACAUUUGAACAAUACCUAGACUGACAGUAGUACAGUUUGGGUGGUGAAGGUCUCAUUGCUCACUGAUGGCUUUCUAAAUCCCCUAUGCCGCCGUAAGCCUGAUUAUCGUAGUAUAUUAUUUCUUUGAGGUGUUAUAGGUGAUAUGAAUGGGCAUGUACACUGUUAUGGCCGGAAUAAAACCUAGGUUUGAUGCCCAUUUACAUAUGAAGAACACACGAAUUAAUUUGAUCAGUUAUUAUGCUUUAUUCUGCUUGUUUCUAUGCACUACAAUGCCA
Sequence
(OSA-LNCN2602.2):
CACCCCCUACCUAGCAAUGAUUUAUUUGGUGCAUGCCUUUUAGAGCCCACAUAUCCUAAUUUACUGUGUGUAUAGGGUUAAUUUGAUCUAUGCCAUUGCAAAUAUGUCUAUUCAAAUAAAUGAUGUAAUUCGUCUGUUUAUAGCUGUGCCACUCAAAUAUUAACCAACUGGGCCUUACAUACUUCAUACUUCAUUCAUGAAAUCCAACGGACGAAAAUCAUCUAAUCUAACGCCUCAGAUCGUCCCACAUACCCCCUUCAACCUCCGCACGUAUUCCCUCGCCGAAAAUCAUGCCGCUCACAUCGCUCCUCCUCCCCCACGCGCUCCGCAACCUGCGCCAUCACCUCCCAUGCCACCACUAGCGCCGCCCCACUCCCCGGGGCAAACCUAAUCGCCGCCGCCACCUACUCCUCUCUCCCCUGCCGUCUCAAGCUCCACCCCCUUGCUCCUCUUGCGCCACCACUGGAUCACUCUCCACCCCGGAGGCACCGCGGGUGAUGGCGACGCGGCGGCGGUGCCAGACCGCCGUGGCUCCUCUCUGCUCUGCCCCUUCCUUGUGCCUCACCACCUUGCUGUUGAAAGGAAGAAGGAAGUUGCAACCACUGGUGUCAGCGACGUCGACUAAACCCUAGAACCAAGCUCCAGAAUCGAUCUCCUUUUGCUUACCGGUAAUGGGUGAGCCAAUUCCGAGCCUACAGAAUGGCGUGUGAAAUUGCAAGUACAGAGCGAGCCCAGUCAGUCAUCUCCUCACCAGCACGGCGGUACGAGAAGUUUGGGCACAACAAGCAAGCAGGAGGCUAGCAAAGAAGAAUUUGCUAAGAGGCUUUGAUGAGGUCAGGGAUUUUGUUGCAGAUCAGAUGUCUUUGAGGGUAUCACAUUUCAUGCUGACCG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
49.59%
ME_num:
MEP:
48.98%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flower
Tau :
0.70
Avg Expression:
2.75
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.71826749059998 | 0.00725504604803413 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.93845417659727 | 0.000860992256841532 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.02975189882266 | 0.000159045055070217 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.1908097102743 | 0.000540135728981873 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.83874981060435 | 0.00336985528046519 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.86902779756806 | 2.317582281003e-08 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.27978404962111 | 6.38601497862042e-06 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.39647904121744 | 2.95384362719672e-06 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.81602715017732 | 0.000668411829790065 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.23759784172436 | 5.37326485133306e-05 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.56372185295085 | 0.00394463323730422 |