Chr:
Chr12
Start:
24467301
End:
24468027
Strand:
.
Ref_name:
OSA-LNCN2600
Sequence
(OSA-LNCN2600.1):
GGCCAUCAUCGUUGUUGUCGUCAUCGUCGUCUAUCUCUCCACGAUAUAUACAACAUCCUUAUAGAAUGGGUGCUUUGGUCCCCAAGUGAAUGGAGGAAUCUCUCUCAUGCAAUUUUAUCUCCUUAUCACCAGUACUAGCUAGCUAGCUACACCAUCACCAACAAACAGCAUCAAUUCAGGCAGAAUGAGGAGGAGGAGGCAGCAAGUGAUGUUUUCACUAUGCAAGUGCGCAAUCCACGCUAUCUAUCUACUAGAGCUAGCUCCCUUUCUAUGUAAAGGCAUGGCUCAUGUAAAAGGUGGCAGCGUGCAGUGUUGGUGAUGGCCCAUGCAUCAACAAUGGCCUCCACCACCACCAUUACCACUUAUCCACUCAAUUCAUCAAGAGGGACCAUGUCACCAUAUAUGGAGAUGGAACGAGAAGGGGAUGAGGAGACUCGUAUCGUCUGCCGUUCAAUAUAAGUUGAUCGUAUGUGGUUGGAAAUCAACAAGUAUAAUUCCGGCGUUGAUGGAAAAUUGCUUGGGGGCCUUCUCUUCUUUUGUCAAACUAGGAUAUCAACGUAAUUUCGACUGUGUAACACAAUAGUGUGAAAAUUAUUAUUUUUUGUUUAUGUUCGUAUAUGCAUGGUUCAAUUUUCAAUUCAAUUGGAUGUUCAUGUUUUAAUUUACACCUCUCUAUCACCUUGUACAUUUGGAAUUUCACAUAAAAUAGUUCUAAGUCUAGUAAGUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
92.28%
ME_num:
MEP:
5.28%
HE_num:
HEP:
2.24%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.89
Avg Expression:
0.46
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 5.73767553682442 | 0.0213544577232263 |