Chr:
Chr12
Start:
24452866
End:
24454258
Strand:
+
Ref_name:
OSA-LNCN2598
Sequence
(OSA-LNCN2598.1):
AAACAAUAAUACAAGAGGGCAGUGUCCUUUGGUGGAUUGGAUUGCUUGGUCAUAGCCCAUAGAGAAGUUUGUUGAUGCUCAUUUAAUUGCUCAAUAUAGCAAACAGAGUCAACAGAGGUGGACGCAGGGAAAAAGAAAAUCAAAGGCAAGGAGGCGUAGGCAAUGACUUUCUUCAACAAUAUGGCUUGAUGGAUAGCCAUAUGUGCUAGGGAUCAUCUUGUUUUUCCUCUUCUUUUUUGUUUGUAAGGUAAUGUAUAUUGCGCACAUACAGACGUACAUGUGCAUGCAUAUAUAGAUACAAUUUUUUGCAUUCGGAUCAUACGGACGAGGAUGCACAUCAUCUUCCAAGCAAGGUGCGUGACAAACUAUCUUCAGUAACAUGCAUCUUAAUUUCAACUCAACGGAUGUGGUUUCGGCUCCCCUUCUAGGAUGUACUUUCUCCGUCCCAAAAUAAAUCAACCUCAUACGGGAUGUGGCACAUACUAGUACGAUGAAUCUGGAUACAACACAAAGAUAUCCGGAUUCAUCAUACUAGAAUGUGUUACAUCAUAUACGAGAUUGGUUUAUUUUGAGACGAAGGGAGUAGACUAUAGUGCCAAUCAUGAUCAUCAUUACCCCACCCAACCACACACACAUAAAAUACCACCAUAGACAAAGUCACCGUAACGGCACCACCAAUUCAACACUUAGUUAUGUUAACAUGCUCGUACGUGAAAUUCUGCAAGCGAUGUGUGGUGGAAUGCCAUCGAAGGCGACGUCCUCAUUGCCUAGCUAGGUUCCUUGUAUUAUUAUUGGGAAUCCAUUUUUUUCUCCACCAUUGUGGUGCCUUUGACGCAUCUCCUCCUUCACCCUAAGCAUAUAUAUCUAGUACUCACGUACUACUUCCACCACUGCACCCGUGCUAACCUAUAAGUCUGCAUUCAUCUGACCUACUACAAAUUCUCUAGAAGGAAUCCAACUCCUAUCUAAAAUUAACCGUGUCGUUGUAAGGUUUUUGGGUCCGGUUUCCUUUAUAAACUGAAUCAAUUCUUUUAUUUUAUAGUGCAUUGCAAGAGCUCUAUUCCUGUUCCCUCGGAGAAAAGAAUACCAUUUUUUUUAGAAUACCAUUUGUCCACCUUCAAUUGUUGGGUGCAAGAUACUCUUCCGGUUAUCCUCCUAGCAUCACCCUGAGCGAAACCUCACAUGCCAAUGGUGAAUAAAUGACUUCGCUAAUCGCUAACAAAUACAUACUGAUGCCCUGUUAUACGUUAUGCAUAAAUAGAUUUAGGGCUUCAUCUUUUUGCUUAUGCUUAUAUUUAUUAGCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
96.14%
ME_num:
MEP:
3.25%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.90
Avg Expression:
0.77
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 5.90670699766595 | 1.19106558000486e-05 |
2 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 3.72447023453539 | 0.0297136664164292 |