Chr:
Chr12
Start:
23257583
End:
23258064
Strand:
+
Ref_name:
OSA-LNCN2570
Sequence
(OSA-LNCN2570.1):
UACAACAUGAAAAAAAACAAUGUUCAACAGCAAAUGACAUUUUUGCCUCAUCUGACAUUAUUUCAUUUCAUUGCAAUGGUAUCUCAUAAAUAAACACAACGAAAAAUCAGGCUACACGGGCAUGACAGACAUGUUUUGGAAAAGCUUUUGUAAAGUUUUAGGGUGAUUCACUGAUAGAGCUGCUCUAACUAUACAUGUAAAACAUUUACAAGACUGACUGUAGAACUGUUCUAACCAAAGAACCAUACAUGUAGAAAUUAGGGACCGACUAUAGAAAUGCUCAAACCAAUAACCAUAGAUGAUACAUGUAAGAAAAUUUGGGACUGACUAUAGAACUGAUCCAACCAUACAUGUAAAAAUUCAGGACUGACUGCUCAUCACCACACACAGGUCGUGUUGAUGUCGUCGAUCGGAAAAGGCGUAACGCAGA
Sequence
(OSA-LNCN2570.2):
UUUCAUUUCAUUGCAAUGGUAUCUCAUAAAUAAACACAACGAAAAAUCAGGCUACACGGGCAUGACAGACAUGUUUUGGAAAAGCUUUUGUAAAGUUUUAGGGUGAUUCACUGAUAGAGCUGCUCUAACUAUACAUGUAAGAAAAUUCGGGACUGACUAUAGAGCUGCUCAAACCAAUAACCAUACAUGUAAGAAAAUUUGGGACUGACUAUAGAACUGAUCCAACCAUACAUGUAAAAAUUCAGGACUGACUGCUCAUCACCACACACAGGUCGUGUUGAUGUCGUCGAUCGGAAAAGGCGUAACGCAGA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
9.55%
ME_num:
MEP:
70.33%
HE_num:
HEP:
19.92%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.55
Avg Expression:
6.76
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.23008210773102 | 0.0447266193373938 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.67227162810033 | 0.00479134065304751 |