Chr:
Chr12
Start:
22238965
End:
22240838
Strand:
-
Ref_name:
OSA-LNCN2540
Sequence
(OSA-LNCN2540.1):
CUCAGAGCGGAGAGAGCGGCGUCCCUGCGCCUCGAUAAUUCCGCCCGUCAUUAUCUCCUCGUUCUCGCCGAGCUCAUUCCUCUCGGUGUUUCUCUCCUCUGCCGCUCGCCCUUAUCUCCUCUCCUCCGUUGCGCUCUCUUUCCUUUCACUCCUUUUCUCCUUCUCUACUCACAGCUAGCGACGCCCUCCAUCUCCGCCCUUCCCCCUCUGCCCCACUGCAGCGUUACUCCCCGUACCCCUCAGCCACGGCACCCUCCCUCCAGCCGGCGGCGCCCUUCCUCCGGCGACGACGCCCUACCCUUGGCGGUUGGUGCCCCAGCCGCGGCGCCCUCCCCCUGGCCGGCGACGUCCUUCACCCGGUGGGCGGCUGCUCAGCCCCCCCCCCCCCCGGUCGACGGCGCUCUUCCCCCGGCGGGUGGUGCCCUACCCUUGGCGGUCAGCGCCUCAGCCGCGACGCCCUCCCCCUGGCUGGCAGCGCCCUCUCCUCGGCGACAGUACCCUCGCGGCGCACGGCGGUGCCCCCGCCAAGCCACCAAGGCCUCGGGCAGCGGCGUCCUCAGCCUCUAAUGAGCAGUGGCGCCGAGGGCGGAUCCGGCGGUGGUGGCAUCGGCGACGUCCGCGGGUGGAUCCCGCGGCGGUGGCGGCAGCCGAGGGCGGAUCCGGUCGCCUUUUUUUUUCUUUUUUUUUUUGCUCGAGUUUAUUUUUUAUUUUUUUGGAAUCGGACAUUGGGAUUCAUGAGCUCUUAGAUUAAAAUUGGCUUUUUUGUGCUGUUUUUGGUUGUCUCAUUGUUCGAUUUAUUUGGGGAUCAAGCUGGGGGAUUUUUAUUUUUGAAGGACGCCGUGGCGGAGGGCGAGGACGGCGACGCGGUGGCCGGCGAGGAGGAGGAGGAGGAGCGGCGGCGGCUAAGCGAGGAGGAGCAGCGGCGGCGGCCGUGACCGGCCGGUGGAGGGCGCCGAGGCCAGUGCCCGGGGCGAAUGGCAGGAGGUGGGGCCCUGUCGGCCAGGCUGGCGGCGCGCCGUGGUGGAGGGGCGUGGCGGAGGGGCGAGGACGGUGACGCGGUGGCAGGCGAGGGAGGUCCCUAGGGUCGUCGGGCGGCGGGGAGGACCAAAUUCAUGAGCUCUAGAUUAAAUUUGGUAUUUUCGUGCUGUUUUUUGUUGUGUCGAUUGAUUGAUUUGGGUAUUUUUGAAGACUACCAAAAUGCCCGCUUCGCCACGGUGUAUUGAACUAAAAAUAUUUGUUUUUAAGUGAAGUUAUUUUCACACUGCUUUGGUAUUUUUGCUCGUUAGAAAAAGUCUCAAAUAAUAGAGAGAAAUAUAGUAGCUUAAUAGUGUGUUGCAACGGAAAAAAUUAAUGUUAUUAACUUUUUAAAGUAAUAAAAAAGGAGCAUUCACAUUAGCUCUUAUAGUUUAGAAAUUUUCAUAUUAAUAUUAUUUAAUUUUAGUCUAAAUUUAUAUCAUGACAAAUAAAUAAUUAUAUUUUUAGUCGAAAAAUAAAUCCAUAUCAUGAGAAAAAUCUAGCAAAUUUUUAGUUAAUUCAAUUUAGUUGGAAUUAAAUUAUUAAGCAGUAAUAAAUAAUUAAAAUGGUACUAAUGCUAUUUCUGAAUAUAGAAAGAUGCUUAAAAUUAUUGAGAAUUAUUGAGAGAGAAAACACUAAUUUUAUCCUAGCCCAAACUUGCGGACCAAUUUGGAGGCCCAAUAGUGCCGCGGCCCAAUGCGAGAGAAGCCAAAGCCGUCUGAUUGAAUGGACGGUUCAGAUUAAUCCCAACCUAUAGAAAUAUAUGCAACCAAAACCCUAACCUUAAAUUUCAUUUCCUCCCUGCCACCGAUCCCUCCUCUCUGUCUCGAUCGAAUAGCGACAGCGGCGGCGCCCUUCCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
29.27%
ME_num:
MEP:
44.51%
HE_num:
HEP:
26.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.81
Avg Expression:
19.39
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.33426337472995 | 0.0401012074788074 |
| 2 | Nipponbare // shoot_apical_meristem // 0_days_after_shift--/--Nipponbare // shoot_apical_meristem // 4_days_after_shift | 1.45098638280006 | 0.0433215857507165 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -3.02561544785689 | 6.57608526854485e-14 |
| 4 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 2.05932138114045 | 0.00677031987542131 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.22825092077551 | 0.0472176041550431 |
| 6 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | -1.35656226260713 | 0.0204216379798475 |
| 7 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.91674611993986 | 2.2907881956589e-80 |
| 8 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.75061940479161 | 4.30241503611013e-05 |