Chr:
Chr12
Start:
21105557
End:
21110201
Strand:
+
Ref_name:
OSA-LNCN2498
Sequence
(OSA-LNCN2498.1):
GUCUCAUAGAUUAAGGGAAAACUAAAGUUCGGAUAAUGUAAUUUUAUAAUAAUUUAAGGUUUCUAUUUUUCUUAAAGUAUCUUAAAAAUCCAUUCACAAAUUUUUAAGUAGGAGAUGGAUUAAGUUCUUACGACUUUUGAAUCAUGUUAUUUUCUCGAGUAAAUAAUAAACUAUAUAUUGCUUGUAGUAUGGCUACAAAUUAAAAAUGUGAGAGCAAGAUACUCAAAAUUCUUGUGAUUAAAUCGUCUCAUGAAGGCGCAUGAUAUAUUAAGAAAGAGAGGGAAGCGUAUACAUGAAGAAAAGAAGAAAGGGAAAAAUGAUAAAAGGGAGGGGAAGCAUAGGUACCCACGCGUACGUAGGUGCGUAUCGAAGGUGGAGAUGUGGGACCUUGUAGUAUUUAGUUUCUUCUAAGAUCAAUUUAAUCUAAUGGUUUAUAAUAUUGAACCCACCGAUUUAAGUGAAAAUCAAGUAAUAGAUAAUUUGCUUUUUUUCUUAGAAUUUCUAAUAUGUUCUCUAAUUUAUUAGAGCACCAAGUGCUAGCUUGAGGGUAUUUGAAAUUUUAAUGGACUUACCACAUGUAAUGAGAAUAUUAACAUGUAAUAUAUAUGUAUGGGAUAUAUGUUAAUAUUCAUUCUAGCUUUGUCCAUGUUUAUAUACAUGUAGAGAGAAAUUAAAUAUGUUGCUAGCAAACCAUUAGAUGUCUAAUUAAUAGCAAAUAAUUUUGACACAUAUUUGCAAUUGUUCAUAUAGCUCUUAAGAUUCAUGUUACCACUUUGAUUAUUCGUUGAUCACCAUGAUUCGCACGAAAAAAAUAUGUACUACUUAGGGUUUAGGACAACUGAAAUUUAUGAAUUAUCUGAUUUAUGUGAUAGCUAUUUGAGAUUAUAAACAAAUGAAUUAACUUCUAAAUAGUUAAAAAGUCGUUUAAGAAAAGCACCAUUUAUAAACUUGGAAAAGCGUGGAGCGUGCAAACGAAAAUGCAAAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
76.02%
ME_num:
MEP:
20.12%
HE_num:
HEP:
3.66%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.99
Avg Expression:
19.55
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 6.49598417485876 | 2.00544863025238e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 5.1768626688846 | 0.00145545093907244 |