Chr:
Chr12
Start:
20781279
End:
20782908
Strand:
.
Ref_name:
OSA-LNCN2495
Sequence
(OSA-LNCN2495.1):
CCGGGCGCCUGAUGAGAAGAGAGAAUAUCGGGCCCCCUGCACUCACCUCUACCCUUAUCUAUCUUAUCCACUCACCUCCACCCUUCUUUUCUCUCACCGUUCACUCUCUUCUUCCCAAAGUCCCAAACCACCAUUCCCAAAGCUCUGAUCCGGCAGCAGCGGCAGUAGCGGCGGCACCCGCGGGACGAAGAGGUUGCGGUGGCAGCAACUCCCACGGCAGGAGGAGGCGUCGGCAACCACCCGUGCGAGGAGGCCCACAACAGGAGGCGGCUGUGAAUCACGGGCAAAAGAAGGCGGUGGUGGCGGCGACCUACGUGAGGAGGGUGCGGCUGUGGCGGCGGCUUCGGUGACUUGCGCGAGGAGGCCCACGGGAGGAGGCGGUUGAGCCCAUGGCAGUGACUUGCAGGCUGAAGGAGGCAACAGCGACUGCGGACUGCGGUGCCUUUCUCAAGCGGUCCUCCGAUGGCUAGGGAGAUGACACUCAUAGGCGGAACUCUAACAUCUUCGUCCGCGGGUGCCCUCCUCCUAUGUGUUUUUUUGUGUUUUUAGACCAAAGUGUUUCAACGGGGUUUCCGAUGGUGUUUCAUUUUUUUCUUUGUUUUUUUCUCGGAUCUUGUUGAUGUUUUCAAUGGCUUAAAUCAUUUUAUUUCAUAUGAUGAACCAAAUUGUUUCAUCUAGCGAUCCAAUUGUUUUUCUCUAUUUUCUAAGAACUGGAACACUCUUAAAAUGGCUUAAAUCAUUUAUUGCAUAUGUUUAACUAAAUUUAUUUCAUCUAGCAAUCCGACUGUAUUUCACUUUUUUUUUAAGAACUGAAACAUUCUUUCACUAAUUAUUAAAACAUUGUUUAAUAAAACAACGCUCGAUUUGUAGGUGCUUCUCUUUAUACCCAACGAUAGAGAUGUAAAUCAUCUCCAUUAUUUUUUAAGAAAAUAUAUUGUUCAUGCAGACUGGUGGGAUUACCAACUUCGAAUACAUUACCAAAGAAAAAAAUAAGGGGAAAGUUACAAAUCGGACGUCCGAUAUAUUUUCAAAUAUCGGACGCUGCUCCACGACUGUUGCAUGCAUGCAGGGCCACAUGAGGAGCAAGGAUGUCACAUGCAUGCAGGAGAGUUGGUUGCCAAGGUGGAAUGAGACACCGUUACUUUCUCUCUCUUUUUUAAUCAAACUUUAAAUAAAAUUUUCUUCUAAAAUAUAUAUCCAAUCUAUAAUUUGAAUCCAAUCAUAUAAUUAGUUUGAAAUUCGGAUAAAUAGUUUAAGAGAAAUAAUCAUUUAAAUUUUGAAACUUGUUUGCAUGCACACUCCCUUGGCUUGUGAGUACACCUAAUGAACUGUUGUGCCAUGCACCUGCACUGUUGAUCUUUUAGAUUGAGACGUCAGAUUUUUUUUUUCUUUCUAAUCGGACGGCCGAUGGUAAGCAUUUCCGAAAAAAGUAGUCAAAGAUGGGGUUCCUAGGGGCGCAUGCGCGCCAGCUGCUUAACUCGCGCGCGUGUCCCCCUGACAAUUAGUUCGUGCGCUGCUGCCGCUAAUUAUGGUAAUUAAUAUUAAUUACUGUCAUUAGCAUUAUUUUUAAAACUGUAACAAUAUAAAUAAUUUAGUUACCCGUCUUUUAGAAAAGUAAUGGAAAGUUUUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
30.49%
ME_num:
MEP:
41.46%
HE_num:
HEP:
27.85%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.74
Avg Expression:
8.20
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.77220888944543 | 0.0218691066152865 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.80743508178572 | 0.0158897857464049 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 6.29281451894862 | 9.50864104950104e-07 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 7.07574418035797 | 2.15205480409786e-08 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 5.74827213230913 | 1.74917590425526e-05 |
| 6 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -2.12732017752911 | 0.0190989112004242 |
| 7 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -3.44241623481615 | 1.656853107876e-23 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.84112599296631 | 8.27578422568914e-05 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | -1.16484087194261 | 0.0281248503310303 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.63085430502826 | 2.55546307924678e-05 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 5.14344253171783 | 0.000121355807279075 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 4.38944801296229 | 0.00190566850936153 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.28119265780143 | 0.000978245752169657 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.91253458446381 | 2.29841644500816e-10 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.00039670990815 | 0.0066956221363463 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -1.22352722808302 | 0.000430476748160545 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -1.60438247218489 | 0.00565452016911877 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.17688618781221 | 0.0109743295489987 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 3.61521947713295 | 0.0328466210678882 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.30117829745134 | 0.0358088018305516 |