Chr:
Chr12
Start:
20661039
End:
20663676
Strand:
.
Ref_name:
OSA-LNCN2492
Sequence
(OSA-LNCN2492.1):
GUCCCCAAACAAGCAACGGAUUGAGCGCACUAGCGCGAAAGCGUUAGCACGCGCAUCCGUUUUCUUGCUCGAAAAAAUGAUUCAAUCUGACUUUAUCGGUAUUCUGGAUUGAGUAAAAAAGGGAUAUAUGAAGUUCAAGGCCUUGCCAAAACCGUCAUGGCCCUAUUAUGUAUAGGCCGUACUAAGCCAAUAGCGAAUAACAAACUCUUUCCUGCUCCCUCGACCCUAAUUAACUCCCAUCCUGCCAAGCCUCAGCUGCCAGCGCAUUGUAUCUAAGCACACUGCGGCAAAUUGAUACAAGUAGCUAAAGAUCUCGCAUCCGACAUCCCCGGCCGAACGGUUAGGCAACACUAGGGCGCCUGGGUCCAAAUUCCGUUUACCAAACAAGAUGUCGAGAGGCGAACUCUGUAAUUCCCCCCCAGCAAAAGUGAUAGCGGCUGUAGCAUCCGUGUGGAAGAGGGUAAGCUUUCGGCAACACCUUUUUCAGAUUGGAAAGGAUGAAUACUUGUGUUGGGUCCCGCAGACCAGGAUAGCCUCAGAUCAAAACCUAAAUGUGCCAGGGGUUGAUCAUAGAAGCCAGGGCAAUAAGUAUUCAGGAAUUUGAGCGCUUAUGUAGCUAAUAACUCUGCCACCUGAAUACUUGAUUCAUUAAGGUCGUCACCCAAUACCCGGAAGUCUCUAUCGUUUUCUUUGUCUGUUAAGCUUCACAGGGUUGGGACUCCCUAAAUCAAACUGCAAUCGCUGUUUAUCAACCACUCACGACGACACCGAGAUCUUCGACUUAGCUCCCACAGGUCCCGGGGCGGAAGAUAACGAAAGGGAGACAAAGUCCUAACUAAAUCAACACACAAUAACCUCAACCUUCUACCAUCCAUCAUAUCAGUCGAGUCGAGGAGAUUCGUUCUUAUCUAUAGAUAAGGCAAGAGAGAACUUAUGACCUCGCGGAUGGAGAGGGAUUCGAACCCCCGGUAUUCCUAUCAAUACUUCGGUUUUCAAGACCGACUCUUUCAACCGCUCAGACAUCCAUCCCUGCGCUCGCCCGCCCUAUCUAUCUGCGCGCUGGCAGGUAGGGGCAAUUCUAUGUGAUUCGCUACGCUUGCUUGCGCUCCACCCCGUAAGCUGACUCUAUUGCCUAGCGGUUAGCGACACUUUUCCGGUAGUACGAAUCGCUACGCUUCGCUUCUUUUUCUUUCUAUAUGAUAAUAUGCACCGUCGGUUGCUGCGCUCCCUGCGGGUAAUAGCAAGAGAGUGAAGAACGAACGAUCCUCAGUCAGCAGUGAAUGAGUCCGACUCGAGUUCGUGAGUCAAAGGCGUGGCAAGAGAGCGAGUUCGACUCGCGAACGACCCGCAAGUGAAGGACCGAUCCUUUAACGCCAGUACUGUUGCGAGACUGGUACUUGGGGGCUCACGAGCAACAUAUAGACUACGGUUGCCCAUCACUCCCUCGCUCCUUUUUGAAGGCCCACCGCUCCCCCUUUCUUUAAGCAUCUAUCCCGGCUUGCAUUUUGGGGCGAGUACUACAGUUCCUCCAUAAUCACACAGAACGCCCAGCUUCGCAGAGCUGCUCUCUCCCCAGUCCACAGCAAGGUGUGGAAUCUGGAUCUACAGUGUGUUCUGACUCUAUUGGAUCAAGUCAGAUACUAAGCCUUCUACUACUACUUAGGUACUUAGGAGAGAAAAUGCUAUAUUUCAGAGAUUGGACUCUCUUACUGUGUUUUUCUCAGGGCAGUUCCCGAGCCGGGUUCCCUGGAUCCAUUCUGACCUAAUUGGAUGAAUGAAGAAGGGGGCGAGCAGAUACGACGGCCUCUUUUUAGCCGAAUAAAGCCGGAUCUACUACAUAGGGAAAGAUUGAGAAAGCAAGAGCAAACCUACUCUACUGUCGAUUCAAAAGGUAAACUGCCCCCGAAGACUUUAUCAAUGAAUGGAUCAAAGAAGGAGGCUCUAUCUAUGUCAUCGUAUAUAAUAAGGGAAGAAGCCCGCCCCUGAUCGAAGAAUGAAGAAGCUAGCCCGGGUAGACUUUAAGAGCUCUUGCUCUGCCUAUCCCUAUCGCUCUGCCUUCUUUCCCCUCGCCUCUGUAAGGAGUGAUUUGUUUGGACAAAGCCGACCAGGAAUCCAACUGAACGACACGAGUUACUCUCCCGAGCCUCCUCUUUAUUCAGAACCAUCUGAUCUAACCUUAGGAAGGCGGUAUGGAUUGACUAUAACUAACCAAAGCGAGUGAGUGGGAUAUUGUGAUACUAAGAAAGGAAGCAAAUGUCUCAAUCUGGCCAACAAUACCAUUUACAUCAGUCGGCAUGUUCUCUGCGACGAAUCUACAUUUCCUUUUCAAUCUGUGCCUUAAACUACACCCACUACUUACUCCACUUCAACAUCUUCUCAUACAACUCUUCCAGUCAUCUCCUCAGUCUCUGCUUCUCCUCUUAAUUCCUCUCGUCCACCUCCUCCUUCCCCAUGUCCUUAACACUCUCAACAACCGACACACUCUAUGACCACUCGAACCACAGAUCGCACUAUGAAACCUCAGAAAUUCCCUGAUUUCAUUGCCUACUCAUCUACCCUGCAUCCAUUGCCUCCUUCCAAUCAAGAGACUAAACCAACAUGUUAUUCAGGGGCUGUUAAACAUCCACAGUGGCGCUCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
72.56%
ME_num:
MEP:
13.82%
HE_num:
HEP:
13.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.96
Avg Expression:
74.87
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.19029477169521 | 1.26551161047485e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.1186781289958 | 4.80122220018653e-09 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.79967029821328 | 9.61340495651948e-24 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.21862465359765 | 5.12546557565761e-14 |