Chr:
Chr12
Start:
20025183
End:
20026316
Strand:
-
Ref_name:
OSA-LNCN2487
Sequence
(OSA-LNCN2487.1):
AGAUGCUAUCUGCUUUUGCAUGACUUAUCAAGAACACAGUAAUCUAGAUCACAGUUACAGCCAACUUGCCUCCAUAUCUUCCAUGAAGCAUUUAUCCUUCCUAAAGUUUAGUCCCUAUUAGAACAAACUCCUUUCGAUCCAAGCCUCAAAGCAAAGCAGAUUGUUAACCUAUCCUAGAAAGCAUGGCUGCAUCCAGCUCAAAAUCCAGAGAGUAGUCCUUCUCAAUGUCCAUAUCCAACAGAACUACAAAGCCAUGUGUCUGUUCUCAUGGAAAAUGACACAAGCCAAGCAUGAACCCUUCUUCAAGAGCAUCCCUGUGUUUUCUGAAAAAUCAGUGAUUCAGACACAUUACUCCUUUCAGAUGAAGGAAAUGGUGCUGCCAUGCUGAUUUUCUCACUAAGCAUGAUACUCUAUAUCAGAUGAAAAUGAUUGGUUUUCUCACUGAACAUGAUAGAUUGAGAUGGGGAAGUGAUCAAUCUAAAGAAAAUAGGAUUGUACUAUCUCCUGGUCUCACCACUGUACUCUUUCCAGUGUUGCAAGCAAUCCCAAGCUUUUCCUAGAAAAUAUGCGCGAAAUUGUAUUCCACCGGCAAUCAUUUUCUUCUCCAGUUAAUUAAUACUGAUACUAAUUUCUACUGAUAAUUCAAAGCAUACUGAUAUACUGUAGAUUUAUGGGUCUUAUCAAAAUAUUUGCAGCAAGGUUUCCUCUCUGGUAUUAUAUGAAUUUUUUGCAUCCCAAACAAACCAUAAAAGGCUAAAAGCUGCCAUUCAAUUUUGGCAGCAUUUCAGUAGCCUGUCUACUGGUUGGACUGAACUGCAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
89.23%
ME_num:
MEP:
10.37%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
crown
Tau :
0.94
Avg Expression:
1.86
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -5.17173326552268 | 0.00376369409408561 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -5.26351616429215 | 0.00232545045248816 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.41760738420874 | 0.00175182513056204 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.45446997198715 | 0.0281572398982183 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.68331591905293 | 0.0109184465566124 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -4.84830137853692 | 0.00811683055206748 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -5.52048186568265 | 0.00127764594716681 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -5.13365188418213 | 0.00464725778404552 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.22877857184884 | 0.00212680610007945 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -5.7033791126024 | 0.000846670559368872 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -4.16019525738405 | 0.0177150356260284 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.35953801371586 | 0.00980503368218129 |