Chr:
Chr12
Start:
19322962
End:
19326202
Strand:
-
Ref_name:
OSA-LNCN2471
Sequence
(OSA-LNCN2471.1):
CCCAUCCGAGCCUUGAGCUCUUCUUCUUCUCUCUCCUGUCAAGUCCGGCCGACGCCGCCAUCGGUCGAUCUCCUCCUCUAUAGUUCCCCUAGCUAAAUCCUUGCACCACUGACUCCCCCUCCCUCCGGCGAACCCAUUUUUCCCGUUUUCCCCUUCUCCCCCACCCCAUAGCAACCACCACAACCACCUCCUUUGCAGCCGAAGAGAAGCUCUUCUACUUGCCGUUCCGGCCAACUCCUCAUCUCCCUCUGCCGGAAACCAUCCUCCCCAGAUGCGCGUCGUCCGGGAACACAAGUUGCCACCGACUUUGCCGAUCCCCGGCCACUGGAGUCCCAGCGCCCCUUCUCUCUCUCUCUCUCUGUUGUUACACGGGAAGAAGGAGAGGAGGAAGAUGACGGGAGGAAGAAGAAGAAAGAAGAGAAAAAGAAAAAGAAAGACUGACAGAGUCUAUUUGGAGUUUUUGCUGAAGCUGGGAGUUCAAUUACAUAAGUUAGUUUUAUUCUAACUUAAUUCGCAAAAUAUAGAUUAGACAGAUGGUUUAAGUCUAUAGCCAAACAUUAGGGUUAAGUCAUUCUAUAGCUUUUGUUGUAAUAGUUAGCCACAACCUUGUAAAUACCAUAUUAUUUUACAUAAAGAAAUCUCCUUUAGAGCCUUGAUCAAGUGUAUGCGAUGAAGAUCCAGAUUGUUGAACAUGUAUCAAUCUACUGAUCUAGGGCUUGAUACAGUUAAACAUGUCGGUUUCCGAAUCAUUAGUUCUGGGAUCCGACAGAUGGUGAAUUGGUGAUGGUGAUUACAUUGUCCCUAUAGUGAAAAAAGAUGGUUUUUUGUUCUGAAAAUCAGAAGAGACAAUAUUGUUGUUAUAAUUUUUUUGAAAGAAUAAUGUUUUGAUAUAUCGUGGGGAAUUUGAUUUCUUUAAGAAGAAAUGCUUAUGUAUAUGUACUAGAAAAGGUCACUACAACAAAUAUGCCUUAUAAAGACAUUUUUUAAAUACUAUAGAGACAUCUUUAAAAUGCCAAUAUGUUUUGUAGAGACAUUUUUCUAAUACUAUAGAGACAUUUUUAAAAUGUCUUUACAGUGUUAUAGAGACAUUUUGAAGUGUGUCUCAUAAGUGCCUUUUGCGAACUAAGACGCAUUUUAUAAGAAGUCUCUCUAUGGAAAUAUCAUGACCUCUUGAGUUGAUCAUUUUUAUAUUCAAUGCACUAGCCAUUUCAACCUCAUAUAAUUACAUGCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
75.41%
ME_num:
MEP:
21.14%
HE_num:
HEP:
3.25%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.92
Avg Expression:
6.16
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.99752688619705 | 0.000213131215113241 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.92140673171429 | 5.3377403808833e-11 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.71152604442242 | 0.0151347432812973 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 1.92056539769809 | 0.0478985914322236 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 2.90187155007718 | 0.00011263331316669 |
| 6 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 6.80544643378902 | 1.15262494597199e-10 |
| 7 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.71109725415308 | 0.000548991083888687 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 5.63517388823484 | 0.000107022897327333 |
| 9 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 5.79816502626022 | 4.70718802287663e-08 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 2.60842375068233 | 0.000247364815128197 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 1.82935487634076 | 0.0157491536686121 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 4.73802321174554 | 4.03395688275218e-16 |
| 13 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 5.61409460367447 | 0.041805276210779 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.52559712682043 | 0.0172108403436378 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 2.62948564347275 | 0.00542417554508293 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.93690223252959 | 0.00217452060299047 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 3.10580933928892 | 0.00252125818326357 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 2.7636083273337 | 0.0198608478427745 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 2.06169067329545 | 0.00143454899474091 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.32598801803726 | 0.0356801623594303 |